Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D20
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 85 6e-17
03_01_0034 + 318432-318825,318902-319851 84 1e-16
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 84 1e-16
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 82 6e-16
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 81 8e-16
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 81 1e-15
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 80 2e-15
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 79 4e-15
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 45 6e-05
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 44 1e-04
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 43 2e-04
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 42 4e-04
08_02_0607 + 19285580-19286138,19286734-19287668 29 4.3
04_03_0354 + 14830325-14830826,14831491-14832416 29 4.3
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 29 5.7
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 28 7.6
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 85.0 bits (201), Expect = 6e-17
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFD 562
FLHWYTGEGMDEMEF EAESNM DLVSEY QYQ+ATADE+ E++
Sbjct: 415 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYE 458
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFD 562
FLHWYTGEGMDEMEF EAESNM DLVSEY QYQ+ATAD++ E++
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYE 437
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFD 562
FLHWYTGEGMDEMEF EAESNM DLVSEY QYQ+ATADE+ +++
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYE 437
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 81.8 bits (193), Expect = 6e-16
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFDRGAGAGD 541
FLHWYT EGMDEMEF EAESNM DLV+EY QYQ+ATA++D + D A A D
Sbjct: 410 FLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAEDDYDEDDDAAAAD 460
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 81.4 bits (192), Expect = 8e-16
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFD 562
FLHWYTGEGMDEMEF EAESNM DLVSEY QYQ+ATADE AE++
Sbjct: 574 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE-AEYE 616
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 81.0 bits (191), Expect = 1e-15
Identities = 35/42 (83%), Positives = 38/42 (90%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAE 568
FLHWYTGEGMDEMEF EAESNM DLV+EY QYQ+ATADE+ E
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEYE 435
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 80.2 bits (189), Expect = 2e-15
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAE 568
FLHWYTGEGMDEMEF EAESNM DLV+EY QYQ+ATAD++ E
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEE 435
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 79.0 bits (186), Expect = 4e-15
Identities = 40/76 (52%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = -2
Query: 795 PLGXQDXRTFIG--TPPHPEXXXXXXXXXXYVQAXXFLHWYTGEGMDEMEFXEAESNMXD 622
P+G + TFIG T + FLHWYTGEGMDEMEF EAESNM D
Sbjct: 358 PIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND 417
Query: 621 LVSEYXQYQEATADED 574
LV+EY QYQ+ATA+E+
Sbjct: 418 LVAEYQQYQDATAEEE 433
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAE 568
F+HWY GEGM+E EF EA ++ L +Y + D+D E
Sbjct: 485 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEVEDDDEE 526
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFDRG 556
F+HWY GEGM+E EF EA ++ L +Y + A +DE+ + D G
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-GAESDENEDGDDG 448
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADED 574
F+HWY GEGM+E EF EA ++ L +Y + AD++
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDE 443
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = -2
Query: 693 FLHWYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFDRG 556
F+HWY GEGM+E EF EA ++ L +Y + D D E D G
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSEFDDGD-EGDEG 448
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 591 ATADEDAEFDRGAGAGDSR 535
A DE+A+ D GAGAGD+R
Sbjct: 115 AKLDEEADADAGAGAGDAR 133
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 591 ATADEDAEFDRGAGAGDSR 535
A DE+A+ D GAGAGD+R
Sbjct: 115 AKLDEEADADAGAGAGDAR 133
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 672 EGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFDRGAGAGDS 538
E DEMEF + ++N+ D +E + D DA+ D GD+
Sbjct: 317 EAEDEMEFADLDTNVVDWEAEDEMEFDDDNDNDADDDGDNFGGDA 361
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 684 WYTGEGMDEMEFXEAESNMXDLVSEYXQYQEATADEDAEFD 562
W+TGE + +F + E + D + +E DED + D
Sbjct: 301 WFTGEAVQAEDFDDMEDDEEDDEDDDEDEEEEEEDEDEDED 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,383,350
Number of Sequences: 37544
Number of extensions: 276993
Number of successful extensions: 535
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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