Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D18
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    35   0.017
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.4  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   5.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   7.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 618  PVPYPVQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 490
            PVP P  G    P+P  +A PVP+    A PS    R ++PSP
Sbjct: 1218 PVPTPSAGLPPVPVPTAKAPPVPAPSSEA-PSVSTPRSSVPSP 1259


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 540 LFYWVRDVLLDGVRGGHWYLXRGTELAS 623
           +F +V   L+  VR GHW L     LAS
Sbjct: 624 MFSFVEGALVKAVRSGHWVLLDEINLAS 651



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 537  GLFYWVRDVLLDGVRGGHWYLXRGTELAS 623
            G F W    LL  V  GHW++     L S
Sbjct: 2012 GRFEWFDGYLLKAVEEGHWFVLDNANLCS 2040


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -2

Query: 643 PSARPCREASSVPRXRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCT 464
           PS+ P   A+S         PLT   ST+ T       S ++S ++    STS ST L +
Sbjct: 287 PSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS-STPLSS 345

Query: 463 LRSPYRT 443
           + S   T
Sbjct: 346 VNSTTAT 352


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -1

Query: 725 NQXXPRXEARPIPGRKPXP------YPVKYTLTAQCPSMSRSQFR 609
           N   P+ + R +PG  P P       P   T T+  P+ + S FR
Sbjct: 282 NSSTPQIQFRDLPGAHPSPTPSNAGIPTTLTNTSSAPNFANSTFR 326


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 615 VPYPVQGTSARPLPRREAHPVPS 547
           VP PV G +  P P R   P+PS
Sbjct: 592 VPTPVPGRTLSPKPTRIPTPIPS 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,908
Number of Sequences: 5004
Number of extensions: 40301
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)