Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D14
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   5.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   9.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.4  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   9.4  

>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 386 PSGVSRNTSGTARAAWYGRRTAETDVVGRRLSPRRPVGRASSGWRRVS-GCSVNRGNPPS 210
           P+ +  + +G  RA+ + R  +  +   + L  ++PV   SS     S   S +R +PP 
Sbjct: 101 PNSIMGSNTGKLRASSFTRLVSPREGFAQ-LPYKKPVSPYSSSSAVSSTSSSFDRTSPPW 159

Query: 209 LNRF*PRTEI 180
           LN   P TE+
Sbjct: 160 LNYVEPHTEL 169


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -2

Query: 193 PGRRSDVGCKSAGESFSGWALKXPGPAICSQHLQIVESHIPRAPPRRGDLVGGSAP 26
           P  R++VG KS    F G +L   G A    + ++V   +    P   DL     P
Sbjct: 131 PHDRAEVGTKSLSAQFGGMSLGADGAAAMPTN-ELVSVDLYNQTPEISDLTSPPPP 185


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 302 DQRHQSPRYGGHTR-PPGRCRWCSGIPRWARTSLPGRNAIHRRP 430
           D+R  SPRY   +R P GR R     P + R S P RN  HR P
Sbjct: 135 DRRSMSPRYRSRSRSPDGRSR----SPDYDRRS-PKRN--HRSP 171


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 335 HTRPPGRCRWCSGIPRWARTSLPGRNAIHRRP 430
           HTRP  +C W S   +W  T  P R A+   P
Sbjct: 24  HTRPHKKCDWRSW-EQWESTGNPVRIALVADP 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,045
Number of Sequences: 5004
Number of extensions: 51879
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)