Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D14
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.54 
U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical p...    29   5.0  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    29   5.0  
U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   6.7  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 489 RSPQPPTRRPVLLVPAR*SDGSVRRSLNPLRSPRDHHREETAS 617
           RSP PP RR +   P R S    RR ++  RSP    ++ + S
Sbjct: 113 RSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRS 155


>U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical
           protein F28E10.1b protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 154 PLHSYTRRPISVRGQNLFRLGGFPRLTLQPDTRRHPEDAR 273
           P+ S +R+P+S   ++LF +GG    T Q D R+ PE  R
Sbjct: 524 PITSPSRKPVSPEPRHLFVMGGRRSTTPQED-RKVPEPPR 562


>U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical
           protein F28E10.1c protein.
          Length = 873

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 154 PLHSYTRRPISVRGQNLFRLGGFPRLTLQPDTRRHPEDAR 273
           P+ S +R+P+S   ++LF +GG    T Q D R+ PE  R
Sbjct: 620 PITSPSRKPVSPEPRHLFVMGGRRSTTPQED-RKVPEPPR 658


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
           protein F28E10.1a protein.
          Length = 1134

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 154 PLHSYTRRPISVRGQNLFRLGGFPRLTLQPDTRRHPEDAR 273
           P+ S +R+P+S   ++LF +GG    T Q D R+ PE  R
Sbjct: 666 PITSPSRKPVSPEPRHLFVMGGRRSTTPQED-RKVPEPPR 704


>U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical
           protein F41G3.2 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +1

Query: 214 GGFPRLTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQN 393
           G  PR   +P + + P+      + G  R+P T    VR         PL+ R TP+G+N
Sbjct: 160 GSMPRAQRKPGSYQ-PQMHDHRSQDGGYRQPQTETFFVRHQ-------PLLRRRTPVGRN 211

Query: 394 QPAGSERDTP 423
           Q   S R  P
Sbjct: 212 QLRHSRRSRP 221


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 268 ARPTGRRGDSRRPTTSVSAV-RRPYQAARAVPLVFRDTPLGQNQPAGSERDTPPT 429
           A P   R     PTTS S++ RRP  A+ +VP V    P G      S R  PP+
Sbjct: 364 AAPGAPRSRIAMPTTSSSSLARRPGSASSSVPRV----PTGAASMTSSSRIRPPS 414


>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +2

Query: 215 GGSRG*HYNPTRGATPRTPDRRVVEAIVDDQRHQSPRYGG---HTRPPGRCRWCS 370
           GG    +Y P +    R P    +E IV   R Q+P       H +P   CR C+
Sbjct: 120 GGQPPIYYQPPQITQTRLPQPAAIEQIVRAVRIQNPAGSNVIVHVQPGAPCRRCT 174


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +3

Query: 141 PLNDSPALLHPTSDLRPGSEPVQTRGVPAVNTTTRHAAPPRGRPTDGSSRR*STT 305
           PL  + A L P+   R    PV         TTTR       RPT   +RR  TT
Sbjct: 326 PLATTRAPLPPSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTT 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,374
Number of Sequences: 27780
Number of extensions: 379756
Number of successful extensions: 993
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)