Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D12
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 32 0.12
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 30 0.36
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 29 0.84
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 27 4.5
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.8
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.8
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 7.8
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 7.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 7.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 7.8
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 31.9 bits (69), Expect = 0.12
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Frame = -1
Query: 477 TLVMHPRKERDSEDLSTSSI--FGSAKASQEADNVLIIQDKRLTAVRG-----KKFLQVA 319
T +++P K DS LSTSS+ +G+ ++ + L I+D R + + F +
Sbjct: 159 TPLLYP-KANDS--LSTSSVPEYGNPSKIRKHEGSLDIKDDRNCDIIDVDSAFENFKHKS 215
Query: 318 KNRYSGDLGIVPLDFDKDSLSYQAKKKNKIKLEDSEKVLD 199
R S DLG++ F +D L+Y ++ +L + K+ D
Sbjct: 216 DTRSSDDLGVIGRQFQQDFLAYLKNYRHTYELIEKLKMYD 255
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.36
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Frame = -1
Query: 357 LTAVRG----KKFLQVAKNRYSGD--LGIVPLDFDKDSLSY------QAKKKNKIKLEDS 214
LTA RG ++ +A+ D LG+ +DFD++ ++Y KK+N++++++
Sbjct: 134 LTAARGIIDFSDYIGIAEQLLQHDVFLGVYGVDFDQEDINYSEPLKESQKKENEVRIQEF 193
Query: 213 EKVLDEEYAVPEQNYIDFNEKPPRRGMPSRKFK 115
+ +Y +Q Y + + R+ P F+
Sbjct: 194 VESCHGQYCTFQQIYNNIGKPWVRKVRPVAIFR 226
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 348 VRGKKFLQVAKNRYSGDLGIVPLDFDKDSLSY 253
V G+KF K YSGD GI+ LD+ K S Y
Sbjct: 132 VIGEKF---RKESYSGDFGILDLDYSKVSGKY 160
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 748 LEQTCITSRSTQMNSKTTDLLFSLSWP 668
L + C Q SK D+LFS WP
Sbjct: 140 LNEKCFHRSDVQKLSKRCDILFSSEWP 166
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 708 IXKLPIYYLAFHGQQPIKVVMEAVEHARYMHDIAHVVVDN 589
I KLP + L++H P ++++ + RY I V+ N
Sbjct: 185 IPKLPSHVLSYHSLIPRRMIVTVLPVLRYATSIYKVIDGN 224
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 7.8
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Frame = -1
Query: 246 KKKNKIKLEDSEKVLDEEYAVPEQNYIDFNEKPPR---------RGMPSRKFKKQSDNKE 94
KK N++K DS DEE V ++ FN + RG P +KQS + E
Sbjct: 168 KKDNELKFNDS----DEEDEVDDEEIESFNSFSRKMQTISNSRYRGSPKPNIEKQSCSSE 223
Query: 93 IDR 85
DR
Sbjct: 224 SDR 226
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 734 HNFQKYADEFXNYRFTI*PFMAS 666
HNFQK+ +EF N R ++AS
Sbjct: 745 HNFQKFEEEFGNSRKEWLQYLAS 767
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -1
Query: 381 VLIIQDKRLTAVRGKKFLQVAKNRYSGDLGIVPLDFDKDSLSYQAKKKNKIKLE 220
+++ K+L+ R KKFL++ + + LDF K + Y + I ++
Sbjct: 402 IILANLKKLSKERAKKFLRLILTSKTALINPSELDFTKSFVFYDLSSASSIHIK 455
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/70 (18%), Positives = 34/70 (48%)
Frame = -1
Query: 330 LQVAKNRYSGDLGIVPLDFDKDSLSYQAKKKNKIKLEDSEKVLDEEYAVPEQNYIDFNEK 151
+++ + S +L + +D ++ +Q +N+ + ++ +D+ Y+D +K
Sbjct: 180 IRIQQMNLSNELSRIQVD---NAALWQENMENRERQRRHQETIDKILRFLASVYLDGKQK 236
Query: 150 PPRRGMPSRK 121
PP + MP +
Sbjct: 237 PPSKVMPKSR 246
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 733 ITSRSTQMNSKTTDLLFSLS 674
+TS ST SKTTDLL + S
Sbjct: 285 LTSNSTGKTSKTTDLLIAAS 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,263
Number of Sequences: 5004
Number of extensions: 52730
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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