Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D12
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 31 1.2
07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310... 30 2.7
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 29 3.6
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 29 4.7
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 29 6.2
11_02_0080 - 8083069-8083668,8084563-8084748,8084796-8084852,808... 29 6.2
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 28 8.2
11_06_0065 - 19736265-19737302 28 8.2
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 395 CDALALPNMELVERSSESLSFLGCMTSVTWQCLAVAKVRKAAMTASC 535
C+ + L ++L+E S+E L +GC+T + + A+ KVR C
Sbjct: 1198 CNLIDLLALQLIEASTEVLRHIGCLTKL--RTFAIGKVRNEHCADLC 1242
>07_03_1434 +
26529043-26529927,26530385-26530742,26530820-26531007,
26531082-26531271,26531343-26531447,26531521-26531597,
26531628-26531972
Length = 715
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 273 DKDSLSYQAKKKNKIKLEDSEKVLDEEYAVPEQNYIDFNEKPPRRGMPSR--KFKKQSDN 100
D DSL ++ K+ K+ + V+ + +P + FN PP+ PS F K SD
Sbjct: 253 DPDSLDFKVMKERMYKIFSNAIVVSYSHLLPVVPFNAFNPPPPK---PSNIDPFGKDSDP 309
Query: 99 KEID 88
+D
Sbjct: 310 TNVD 313
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Frame = -1
Query: 261 LSYQAKKKNKIKLEDSEKVLDEEYAV--------PEQNYIDFNEKPPRRGMP---SRKFK 115
L+Y +K + +ED + LD E++V P+++ + F+ + RRGM KF
Sbjct: 559 LAYLPDRKREYSMEDDDVSLDSEFSVEGKLDSNNPDES-LRFDRRNRRRGMLGWFKLKFN 617
Query: 114 KQSDNKEIDRFLNDILNLK 58
S+ +++D++++ + L+
Sbjct: 618 HISNIRKLDKYISKMCELE 636
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 447 DSEDLSTSSIFGSAKASQEADNVLIIQDKRLTAVRGKKFLQV 322
DS +L+ I K S ++ +QDK +RGK+FL V
Sbjct: 279 DSTNLTKKIIVSITKESNNLSELVDLQDKLGQEIRGKRFLLV 320
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 624 YMHDIAHVVVDNVQFMLGLGEDRDGDRYLRQDAVIAAFRTFATARH 487
YM D + D +F L L DRD +YL DA + +A R+
Sbjct: 403 YMRDTMVKINDRYEFPLQLDLDRDDGKYLAPDADRSIRNLYALHRY 448
>11_02_0080 -
8083069-8083668,8084563-8084748,8084796-8084852,
8085010-8085092,8085388-8086012
Length = 516
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 200 MKNMQSPNKTI*ILTKNPRGVVCLHES 120
MK M S + TI +L KNP+G CLH S
Sbjct: 29 MKYMDSHDPTI-LLGKNPQGNTCLHIS 54
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 624 YMHDIAHVVVDNVQFMLGLGEDRDGDRYLRQDA 526
YM D + D +F L L DRD +YL DA
Sbjct: 389 YMRDTMVKINDRYEFPLQLDLDRDDGKYLAPDA 421
>11_06_0065 - 19736265-19737302
Length = 345
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -1
Query: 267 DSLSYQAKKKNKIKLEDSEKVLDEEYAVPE--QNYIDFNEKPPRRGMPSRKFKKQSDNKE 94
D+ + +K+ +I+ DSE +++++ + DF P + PSR + Q K
Sbjct: 159 DAAAAADEKEEEIEYTDSESDDEKQFSPVSVLDHPFDFESSPIHKRSPSRVAQPQGSPKN 218
Query: 93 IDRFLNDIL 67
F+ D+L
Sbjct: 219 AMAFVRDLL 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,209
Number of Sequences: 37544
Number of extensions: 341827
Number of successful extensions: 1006
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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