Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D11
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    59   6e-10
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    30   0.45 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   1.4  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    27   2.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.2  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
 Frame = -1

Query: 593 KVSDKLDCGVSMKWTAGS-ADTL-FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPG 420
           +VS  ++ G ++ W A S A+ +   + +KYALD+D  +  KIN+  +  L Y Q +RPG
Sbjct: 194 RVSSDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPG 253

Query: 419 VTLTLSAAIDGQNFNAGGHKVGVAL 345
           VT+ L   +D Q      HK G++L
Sbjct: 254 VTVGLGLQLDTQRLGQPAHKAGLSL 278


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 553 GRRVRPTHYSELERSTRWTKTRLCTPRSTTSP 458
           G  V+PT  SE+++ T W K  L  P ST+SP
Sbjct: 45  GLLVKPTMLSEVQKPTLWEK--LTKPASTSSP 74


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 447 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 271
           W    T PR       C + T+++ + PQ    P T  L    K   +D +  L  PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 472 ILACRDASWSSAYFAPTPNNV--SAEPAVHFMLTPQSSLSDTFWVD*TAEIFTIVY 633
           +  C+D   +S  F P P+N+   A+  V ++  P  S+ D    D TA  F +V+
Sbjct: 521 LATCKDVVCASDAFFPFPDNIYRLAQSGVKYVAAPGGSVMDQAVRD-TANEFNMVF 575


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -2

Query: 481 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 311
           +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,683
Number of Sequences: 5004
Number of extensions: 70415
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)