Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D11
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 42 8e-04
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 41 0.001
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 37 0.017
12_01_0767 - 6956758-6957138,6957491-6957581,6957796-6957861,695... 31 1.4
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 30 2.5
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 29 4.4
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 28 7.7
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 7.7
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = -1
Query: 569 GVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAID 390
G + + + + G ++ALD ++ A+ NN ++ Q + RP LTLSA +D
Sbjct: 305 GAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVD 364
Query: 389 GQNFNAGGHKVGVALELEP 333
+ + KVG++L L+P
Sbjct: 365 TKAIDKAS-KVGLSLVLKP 382
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = -1
Query: 593 KVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVT 414
KVS G + + S + G ++ALD+ ++ A+ NN + Q + RP
Sbjct: 342 KVSKTSAVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEFRPKSL 401
Query: 413 LTLSAAIDGQNFNAGGHKVGVALELEP 333
+T+S +D + + KVG++L L+P
Sbjct: 402 VTISTEVDTKAIDKSS-KVGLSLVLKP 427
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = -1
Query: 596 QKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGV 417
QKVS+K+ + + D G Y L Q L KI+ ++ +++L PGV
Sbjct: 262 QKVSEKVSLASDFMYNHMAKDVTASFGYDYMLRQ-CRLRGKIDTNGVVSALLEERLTPGV 320
Query: 416 TLTLSAAID 390
LSA +D
Sbjct: 321 NFVLSAELD 329
>12_01_0767 -
6956758-6957138,6957491-6957581,6957796-6957861,
6958079-6958194
Length = 217
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 618 DFGGSIYPEGI*QAGLRRQHEVDG-GFGRHIIRSWSEVRAGPRR 490
+ GG G+ QAG RR+ V G GFG W E R G R
Sbjct: 158 EVGGRRLLAGLAQAGHRREAVVVGDGFGTEAAPHWGEARGGRER 201
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -1
Query: 545 GSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGG 366
G+AD+ FG+G L S + +++ S +GL QKL+P V + ++ + F A G
Sbjct: 645 GNADSTFGMG----LTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQANHYAFLALG 700
Query: 365 HKVGV 351
V
Sbjct: 701 SYTSV 705
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -2
Query: 556 SGRRVRPTHYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA 419
S + + TH++ RS+ ++ +RLC P TT+P T+ + +A
Sbjct: 349 SSAKAQGTHHASSVRSS-FSNSRLCLPSRTTNPPPKNATSNSKTEA 393
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 330 ENITKPTLVDKYILLSQPNSVYRESISIVEI 238
E + + T+VDK I LS PNSV + + E+
Sbjct: 141 EGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 596 QKVSDKLDCGVSMKWTAGSADTLFGVG 516
QKV D+LDCG+ + T G + +G
Sbjct: 470 QKVCDRLDCGLEINNTVGGMRKILSLG 496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,237,978
Number of Sequences: 37544
Number of extensions: 472320
Number of successful extensions: 1181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -