Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D11
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical...    30   1.7  
AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical...    30   1.7  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   5.3  
Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    28   9.2  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 26/87 (29%), Positives = 44/87 (50%)
 Frame = -1

Query: 593 KVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVT 414
           KV+  ++ G  + W  G     + +  KYA  +D ++ AK+N+ S + +     L P + 
Sbjct: 197 KVASNVEVGTQLGWKVGGNGADYALATKYAPSRDLTVRAKVNSSSQVAVAATHSLSPALK 256

Query: 413 LTLSAAIDGQNFNAGGHKVGVALELEP 333
           LTLS   +    +A  HK G+ LE +P
Sbjct: 257 LTLSTQFNLAANDA--HKFGLGLEFDP 281



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 741 GWLAGVHTQFDTQKAKFSXDNFALGYQSGDFALHTNVDNGKDFGGSIY 598
           GWL G    FD+   K +  + A G+ +  + LH+ V N  DFG S+Y
Sbjct: 148 GWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLY 195


>AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3b protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 485 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 333
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 40  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90


>AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3a protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 485 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 333
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 38  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -2

Query: 508 TRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPR 329
           T+ ++TR  T  STT+      T+  +A   P     PS    ++  AT   LP+  S R
Sbjct: 238 TKPSRTRSLTSTSTTTAKLPTTTSTTFAA--PQASTEPSEATEALATATPADLPTKPSGR 295

Query: 328 KYNQTYSCR*IHTVVTTK 275
           +       R + +  TTK
Sbjct: 296 EITTITGTRKLSSTSTTK 313


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -2

Query: 556 SGRRVRP---THYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMD 386
           SG R  P    HY  +  + + T    CTPR+TT+ ++   T      A P     P+  
Sbjct: 261 SGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTT-----ALPPCVYTPAPP 315

Query: 385 RTSMQVATRLALPSNSSPRKYNQT 314
            T+       A P+  +PR Y+ T
Sbjct: 316 ATAPPAT---ATPATQTPRTYSTT 336


>Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC455.3 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 593 SG*IEPPKSLPLSTFVWRAKSPDW*PRAKLSLENFAFCVSNWVCTPA 733
           +G IE  + +P +TF+W+ +  D   + KLS EN    +S W+  PA
Sbjct: 315 TGLIEAFRRMPDATFIWKYEEDDKTLKNKLS-ENVV--LSKWIPQPA 358


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 297 YILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAF 187
           Y+LL+ P+  YR   SI+   CI P ++ + + F  F
Sbjct: 79  YVLLALPDYHYRYQKSIMSSICIPPPSYASCFLFVHF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,549
Number of Sequences: 27780
Number of extensions: 406535
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)