Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D09
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.8  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   2.4  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   7.2  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   7.2  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.5  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 394 SDVSGRTILSAGSSTVTSFNNGLISASRTKIAANFSSAMASSEIATSDG 540
           S    +T+ ++ +ST++ F+    SAS +    + SS+  S   A S+G
Sbjct: 195 SSADAKTVSASSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAVSNG 243


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 391 TSDVSGRTILSAGSSTVTSFNNGLISASRTKIAANFSSAMASSEIATS 534
           TS  +  + L++ SS  +S  N   SAS T  +   SSA +SS  ++S
Sbjct: 76  TSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSS 123


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 26  HIWFYYKSKKKAIFIHNITVAAKYLLS 106
           H+W Y   KKK++  HN      YL S
Sbjct: 264 HLWDYILKKKKSVVCHNGMADLVYLFS 290


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 346 TTTKA*KTVFLLMKGTSDVSGRTILSAGSSTVTSFNNGLISASRTKIAA 492
           TTT    T       T+   G TI S G+STVTS     +++++ K  A
Sbjct: 212 TTTAVTVTATETYTVTATNGGSTITSTGASTVTSTQPSTVTSTQRKNTA 260


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -2

Query: 289 SSKIVFPTTICLLVAVERLVNSHLPPRSAVSCHCIMAWPKSIRFIV--AIHSYLLLVHS- 119
           SS+I    T+ L    E   +++ PPRS +SC  +       R+IV   I  +++   S 
Sbjct: 415 SSEIGIFQTVKLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESE 474

Query: 118 -VSVIRKEVFCCYCYV 74
            ++   K  F  +C V
Sbjct: 475 TIAFAFKYKFFAFCGV 490


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 292 SSSKIVFPTTICLLVAVERLVNSHLP-PRSAVSCHCIMAWPKSI 164
           + SK+  P  +  ++A+   V+ H+P P S+V  + + A P S+
Sbjct: 36  TGSKVELPFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSV 79


>SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 406  GRTILSAGSSTVTSFNNGLISASRTKI 486
            G T+++     VTSF+  L+  S+TKI
Sbjct: 924  GSTVITLFEPNVTSFDEDLLRNSKTKI 950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,083
Number of Sequences: 5004
Number of extensions: 44327
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)