Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D07
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   4.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.4  
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf...    26   7.1  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -3

Query: 384 CARWKEGHTGYMAVYN-PSRQDLHANLTAVPSVPGTITIQNVSPTVKLVTNYTKNYQPAE 208
           C    +    +  V N P +     +L +VPS P +   +   P+   V +++ NY  + 
Sbjct: 259 CPSTPDEQKNFFIVGNAPQQTPARPSLRSVPSYPSSNNQRR--PSASRVRSFS-NYVKSS 315

Query: 207 DVLVPAKSTVVVSYVPIKHEKREKD 133
           +V+ P+ S   +  +P K  KR+ +
Sbjct: 316 NVVNPSLSQASLEIIPRKSMKRDSN 340


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 708 NVSMLRPPSAA-PVPVTEDANALASR 634
           N S ++PPSAA PVP  E+ NA+ S+
Sbjct: 152 NNSNIQPPSAAPPVPGKENYNAVGSK 177


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 65  KNIV*KQNHCKMQTNCFTLTIYSSFSRFSCFIGT*DTTTVDLAGTS 202
           KN V  +NH      CF L +YS    +S F+    T T + A  S
Sbjct: 131 KNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKTFTAEGANIS 176


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 297 PSVPGTITIQNVSPTVKLVTNYTKNYQPAEDVLVPA 190
           P  P T    ++ PTV   T+YT  Y      + PA
Sbjct: 811 PVQPKTSQASSILPTVPRTTSYTSPYATTSSHITPA 846


>SPAC823.06 |taf3||transcription factor TFIID complex subunit
           Taf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 431 WRPRPRVTQARTYSSFVQDGK-RVTPVTW 348
           W   P+V + R  S FVQD + +V P  W
Sbjct: 93  WFNGPQVAELRRVSGFVQDSETQVKPKDW 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,016
Number of Sequences: 5004
Number of extensions: 53269
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)