Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D06
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 34 0.030
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 31 0.28
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 1.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.6
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.6
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 6.1
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 6.1
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 26 6.1
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.1
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 8.1
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 33.9 bits (74), Expect = 0.030
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -2
Query: 541 SXENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDGAMRDRK 362
S E L ++ N DL+ E KL+ +++A +ER ++L+ AL+ K+ R+
Sbjct: 305 SYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLRE 364
Query: 361 RYQFEVDRIKEAVRAKN 311
+KEA + N
Sbjct: 365 MNANYETEMKEARQKLN 381
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -2
Query: 604 TILKRAPRRKAVPLHKNKRSRSXENNLEQLTKVHKQLVRDNADLRCEVPK 455
T++ + P P H+ ++ + +N++E+ K L +N DL+ ++ K
Sbjct: 74 TLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKLQLAK 123
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = -2
Query: 547 SRSXENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALET------ALKEAK 386
++ E +++Q++ +L + NA+ R ++ +LEK A ER++ L + LKE K
Sbjct: 216 NQQLEESIKQVSS-SIELEKINAEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEK 274
Query: 385 DGAMRDRKRYQFEVDRIKEA 326
+ + K Y+FE R K A
Sbjct: 275 NDL--ESKLYRFEEYRDKVA 292
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 132 VENLMKVHRCTYEERR--NSILKYIHYNITIVLREA 31
V NLMK+ RC +E +S+L++ + +T +L A
Sbjct: 1099 VSNLMKIFRCWFENEAYLDSVLEFSSHILTALLNTA 1134
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -2
Query: 568 PLHKNKRSRSXENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEA 389
P HK++ R E N + LTK+ K +R +R L+ + + + + K +
Sbjct: 29 PTHKSEELRIIEPNNDCLTKLDKD-IRIQGWIRVTTKFLQGKSGSVKVQEIPQDQLPKSS 87
Query: 388 KDGAMRDRK 362
D A+ DRK
Sbjct: 88 SDNAVTDRK 96
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -2
Query: 556 NKRSRSXENNLEQLTKVHKQLVRDNADLRCEV-PKLEKRLRATMERVKALETALKEAKDG 380
N R+ + + Q+T + + + E L L ER++ALET ++ K
Sbjct: 314 NNEKRAIQQKITQMTNETESFFQAKEEKMIETRDALNSELSEYHERIRALETQIESLKSY 373
Query: 379 AMRDRKR 359
R K+
Sbjct: 374 KGRGHKK 380
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = -2
Query: 592 RAPRRKAVPLHKNKRSRSXENNLEQLTKV-----HKQLVRDNADLRCEVPKLEKRLRATM 428
R P ++ PL++N SR+ E L + K H L++ +L+ + K + R
Sbjct: 157 RTPFAQSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHDLIKQITELQDMLDKARDQARKKS 216
Query: 427 ERVKALETALKE 392
V LE + E
Sbjct: 217 RTVDILEGKVNE 228
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = -2
Query: 589 APRRKAVPLHKNKRSRSXENNLEQLTKVHKQLVRDNADLRCEVPKL------EKRLRATM 428
A +RK +H +K + + NLE+L + L A+++ V + E+R+R M
Sbjct: 366 ATKRKIFTIHTSKMNLGEDVNLEELIQCKDDL--SGAEIKAIVSEAGLLALRERRMRVVM 423
Query: 427 ERVK-ALETALKEAKDG 380
+ + A E LK +G
Sbjct: 424 DDFRQAREKVLKTKDEG 440
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -2
Query: 583 RRKAVPLHKNKRSRSXENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALET 404
R K HK+ + S +N+E V + N + + + +++ ++R+ A +
Sbjct: 321 RPKKFASHKSPTT-SDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHEERLKRINANKK 379
Query: 403 ALKEA----KDGAMRDRKRYQFEVDRIKEAVRAKN 311
AL+E ++ A + K + + +IKE R+ N
Sbjct: 380 ALEELNQKKRELAQQQLKEQELLMQKIKETDRSGN 414
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 418 KALETALKEAKDGAMRDRKRYQFEVDRIKE 329
K E E +D R K+Y FE+D +E
Sbjct: 7 KMYEVEPSEKEDNVERQTKKYNFEIDEPEE 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,719
Number of Sequences: 5004
Number of extensions: 39334
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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