Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D04
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 130 3e-31
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 2.0
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 6.2
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 6.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 8.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 8.2
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 26 8.2
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 8.2
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 130 bits (313), Expect = 3e-31
Identities = 70/174 (40%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Frame = -3
Query: 793 SYIPTXGISITDDRSSXKLSCXTKVSDQPSTSVCLYXXXXXXXXXXXXXXXXXXXSWNWL 614
+YIPT ISITD + + K +P+ +V L +L
Sbjct: 364 AYIPTNVISITDGQIFLESELFFK-GIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFL 422
Query: 613 ST-REVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLD 437
+ REVA+FAQFGSDLDA T+ L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+LD
Sbjct: 423 AQYREVASFAQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLD 482
Query: 436 KLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 275
K+ ++ FE +F ++++S ++ I K+G ++ ++ SLK ++ +FL++F
Sbjct: 483 KIPVDRVVEFEHKFIPYLRSSGAEIMEAIRKEGVLSKTTEDSLKAVIKEFLSSF 536
Score = 82.6 bits (195), Expect = 7e-17
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = -2
Query: 755 QIFXETELXYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 609
QIF E+EL +KGIRPAINVGLSVSRVGSAAQ KAMKQVAG +KL LAQY
Sbjct: 377 QIFLESELFFKGIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQY 425
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 439 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 284
DK+DP AF+K T ++ TS + KD T S L I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = -3
Query: 442 LDKLDPSKITAFEKEFTQHIKTS------HQGLLSTIAKDGQITPESDASLKKIVT 293
L++LDP KIT + E I + QG S++ K + P+ A VT
Sbjct: 534 LEELDPPKITTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVT 589
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 606 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 502
+R P L W PLH + + LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 356 GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 490
G+ + S+ + +FLL DF G +L+ T +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 91 YQHSIQPI*MLYYYSSH 141
Y HS++ + ++YYY SH
Sbjct: 803 YMHSLRSLFVVYYYESH 819
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 755 QIFXETELXYKGIRPAINVGLSVSRVGSAAQTKAM-KQVAGSMKLEL-AQYP*GRSFCPV 582
QIF + +L I P INV S+SR+ +A + M + G + +L A Y GR +
Sbjct: 354 QIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASM 413
Query: 581 RF*LG 567
+ +G
Sbjct: 414 KSVVG 418
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 452 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 586
D ++ G+ + + I+SLL+ELS S E S +Q+ +E+
Sbjct: 65 DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,591
Number of Sequences: 5004
Number of extensions: 62606
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -