Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D04
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 175 3e-44
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 175 3e-44
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 175 3e-44
AF003134-5|AAB54139.1| 357|Caenorhabditis elegans Nek (never in... 29 3.4
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 29 4.4
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 29 4.4
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 28 7.8
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 28 7.8
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 175 bits (427), Expect = 3e-44
Identities = 95/174 (54%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Frame = -3
Query: 793 SYIPTXGISITDDRSSXKLSCXTKVSDQPSTSVCLYXXXXXXXXXXXXXXXXXXXSWNWL 614
+YIPT ISITD + + K +P+ +V L L
Sbjct: 337 AYIPTNVISITDGQIFLETELFYK-GVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLEL 395
Query: 613 ST-REVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLD 437
+ REVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+G+LD
Sbjct: 396 AQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLD 455
Query: 436 KLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 275
K+DPS IT FEKEF H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 456 KVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 509
Score = 93.9 bits (223), Expect = 1e-19
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = -2
Query: 755 QIFXETELXYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 609
QIF ETEL YKG+RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY
Sbjct: 350 QIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 398
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 175 bits (427), Expect = 3e-44
Identities = 95/174 (54%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Frame = -3
Query: 793 SYIPTXGISITDDRSSXKLSCXTKVSDQPSTSVCLYXXXXXXXXXXXXXXXXXXXSWNWL 614
+YIPT ISITD + + K +P+ +V L L
Sbjct: 329 AYIPTNVISITDGQIFLETELFYK-GVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLEL 387
Query: 613 ST-REVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLD 437
+ REVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+G+LD
Sbjct: 388 AQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLD 447
Query: 436 KLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 275
K+DPS IT FEKEF H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 448 KVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 501
Score = 93.9 bits (223), Expect = 1e-19
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = -2
Query: 755 QIFXETELXYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 609
QIF ETEL YKG+RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY
Sbjct: 342 QIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 390
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 175 bits (427), Expect = 3e-44
Identities = 95/174 (54%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Frame = -3
Query: 793 SYIPTXGISITDDRSSXKLSCXTKVSDQPSTSVCLYXXXXXXXXXXXXXXXXXXXSWNWL 614
+YIPT ISITD + + K +P+ +V L L
Sbjct: 364 AYIPTNVISITDGQIFLETELFYK-GVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLEL 422
Query: 613 ST-REVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLD 437
+ REVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+G+LD
Sbjct: 423 AQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLD 482
Query: 436 KLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 275
K+DPS IT FEKEF H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 483 KVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 536
Score = 93.9 bits (223), Expect = 1e-19
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = -2
Query: 755 QIFXETELXYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 609
QIF ETEL YKG+RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY
Sbjct: 377 QIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 425
>AF003134-5|AAB54139.1| 357|Caenorhabditis elegans Nek (never in
mitosis kinase) likeprotein 2 protein.
Length = 357
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 509 LLEELSKTHSS----VEQLLCSGIQVRTELGKSCDLTGTEPIPASWNRPPAS 652
L+E L KTH+ V QLL + + + CDL EP P +P AS
Sbjct: 243 LVENLLKTHTDKRPDVSQLLSDPLVLPYLISIHCDLGRIEPPPTDKRKPSAS 294
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 588 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 484
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 588 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 484
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 494 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDL 604
G L L+EE K S V + LC + R+ + K +L
Sbjct: 649 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFREL 685
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 494 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDL 604
G L L+EE K S V + LC + R+ + K +L
Sbjct: 648 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFREL 684
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,153,316
Number of Sequences: 27780
Number of extensions: 360927
Number of successful extensions: 1101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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