Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D02
         (815 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5RH26 Cluster: ATP synthase gamma chain; n=8; Bilateri...    47   7e-04
UniRef50_A2Z5X7 Cluster: ATP synthase gamma chain; n=3; Oryza sa...    34   3.7  
UniRef50_Q96250 Cluster: ATP synthase gamma chain, mitochondrial...    34   3.7  

>UniRef50_Q5RH26 Cluster: ATP synthase gamma chain; n=8;
           Bilateria|Rep: ATP synthase gamma chain - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 292

 Score = 46.8 bits (106), Expect = 7e-04
 Identities = 27/78 (34%), Positives = 34/78 (43%)
 Frame = -1

Query: 815 PLYXKKXIEGASKLTAYDXXDXXGXQSYTEFXXXXXXXYALEEGAXFRXXXXXXXXXXXX 636
           PLY    +  +  +  YD  D    ++Y EF       + L+E                 
Sbjct: 197 PLYSMDTVASSENMGIYDDIDADVLRNYQEFALVNIIYFGLKESTTSEQSARMTAMDSAS 256

Query: 635 PKNAGEMIDKLTLTFNRT 582
            KNA EMIDKLTLTFNRT
Sbjct: 257 -KNASEMIDKLTLTFNRT 273


>UniRef50_A2Z5X7 Cluster: ATP synthase gamma chain; n=3; Oryza
           sativa|Rep: ATP synthase gamma chain - Oryza sativa
           subsp. indica (Rice)
          Length = 368

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = -1

Query: 632 KNAGEMIDKLTLTFNRT 582
           +NAGEM+D+LTLT+NRT
Sbjct: 331 RNAGEMLDRLTLTYNRT 347


>UniRef50_Q96250 Cluster: ATP synthase gamma chain, mitochondrial
           precursor; n=14; Magnoliophyta|Rep: ATP synthase gamma
           chain, mitochondrial precursor - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 325

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = -1

Query: 632 KNAGEMIDKLTLTFNRT 582
           +NAGEM+D+LTLT+NRT
Sbjct: 286 RNAGEMLDRLTLTYNRT 302


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,698,037
Number of Sequences: 1657284
Number of extensions: 10124951
Number of successful extensions: 25703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25679
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)