Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D02
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    29   0.79 
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    29   0.79 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.2  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   7.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.7  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = -1

Query: 812 LYXKKXIEGASKLTAYDXXDXXGXQSYTEFXXXXXXXYALEEGAXFRXXXXXXXXXXXXP 633
           LY  K I  +  L+AY+  D    Q   EF        A+ E A                
Sbjct: 207 LYTTKAINESPNLSAYEVSDEV-HQPLMEFAFANAIFSAMAE-AHCSEMSSRRNAMENAS 264

Query: 632 KNAGEMIDKLTLTFNR 585
           K+AG+MI+K ++ +NR
Sbjct: 265 KSAGDMINKFSIQYNR 280


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 672 SSRPRMXAMDNASQERRRDDRQADPHVQQDPVKLSSTRELIEIISGAAA 526
           SS P +    ++   + +D R   PH  + PVK SS+R+     SGA +
Sbjct: 127 SSAPAVNETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATS 175


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 32  TLFLTTTAPTHRSQRAARHMLKPVSFRVSVAGMGAVQCRHRKSY 163
           T F  T AP H S  A +H   PV+       +  +Q  H   +
Sbjct: 399 TPFSPTLAPQHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTPGF 442


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 478 KCRSFGASIAFGGLVQGGRTRDDLDELPG**QLDGVLLNVRVSLSIISPAFL 633
           K  S  +++ FG +V GG+  D+ D++     L+G+ +N+   +  I PAF+
Sbjct: 790 KVSSTESAVIFGNIVYGGKASDE-DKIV---VLNGIPVNI---IDYIKPAFI 834


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 55   AHTQVTARSPTYVEASLVSRECCRDGSCPV 144
            +H ++ A  P+YV    +S E C++   P+
Sbjct: 3363 SHMRIIADKPSYVTMQTISDEYCKNRGMPL 3392


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 369 ESCHRKTCLLFFIENVFKTFIIETSDH 289
           ES  +   LLF +E  F+++  ++SDH
Sbjct: 455 ESLFKMNALLFILEQGFESWFRDSSDH 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,687
Number of Sequences: 5004
Number of extensions: 41744
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)