Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D01
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 29 0.73
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 27 2.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 5.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.8
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.8
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 26 6.8
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 25 9.0
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 29.1 bits (62), Expect = 0.73
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 594 FHNKLSQLTYVTSSASCPSYPKI*VSLV 677
+ N+LS+L YVTSS S P+Y + SL+
Sbjct: 691 YKNELSELMYVTSSYSQPAYMEFLESLL 718
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 2.2
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +3
Query: 63 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFXSTASPLWKVLG*T 242
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 243 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 395
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 396 IFLPSV 413
FLP++
Sbjct: 151 TFLPTI 156
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 2.2
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +3
Query: 63 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFXSTASPLWKVLG*T 242
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 243 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 395
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 396 IFLPSV 413
FLP++
Sbjct: 151 TFLPTI 156
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 2.2
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +3
Query: 63 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFXSTASPLWKVLG*T 242
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 243 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 395
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 396 IFLPSV 413
FLP++
Sbjct: 151 TFLPTI 156
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 2.2
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Frame = +3
Query: 63 AVKGSRSAKYLLFSFANFSRMSSTFVLGNLSTHDATMPSAVAG*RFXSTASPLWKVLG*T 242
A + R Y++F FA ++T V H + + F + L+ LG
Sbjct: 36 AARWLRICSYIMFGFALVCLFTNTIVF--FFKHTIYRGTLIQKEEFIDVPNTLF--LGCY 91
Query: 243 KM-FLGC---LCIRTISLQRPQGSSRLLYLLNSFSPALKSPVAFIV*S--FTKKSPM--- 395
M F C LC + S PQG LY+L FS A+ A+++ S TK++ +
Sbjct: 92 TMGFQSCINMLCFLS-SQSSPQGWINFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFS 150
Query: 396 IFLPSV 413
FLP++
Sbjct: 151 TFLPTI 156
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 324 NSFSPALKSPVAFIV*SFTKKSPMIFLPSVARRSFCSVNRRFFP 455
N++SPA+KSP A ++S +P+ +R S + N ++P
Sbjct: 175 NNYSPAVKSPAA------QRRSSSYMVPANSRGSPANYNTPYYP 212
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -2
Query: 452 EESPVDATKGSSRYRRQEDHWRFLGETSND 363
+ +P+D +G +Y+R+ +H+R + +ND
Sbjct: 1607 KSAPLDKLRGFMKYQRRSEHYRNPLKRTND 1636
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 439 LTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEK 329
L QKD+ + K+ I D +T+KA D S G++
Sbjct: 159 LNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQ 195
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 418 LATDGKKIIGDFLVKLQTIKATGDF 344
LA DG + IGDF V T A+G++
Sbjct: 422 LAGDGNQTIGDFYVMNWTTIASGEY 446
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 640 EAEDVTYVNWLSLLWNGAAKATEMYQPS 557
+ +DV NWLS+ GA T Y PS
Sbjct: 790 KVQDVRKFNWLSMCTPGALPLTFSYFPS 817
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 367 TIKATGDFSAGEKLFNKYSSLD 302
T+ AT D GE+L+N Y LD
Sbjct: 277 TMIATRDIKKGEQLWNTYGELD 298
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.0
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = -3
Query: 364 IKATGDFSAGEKLFNKYSSLDEPWGR--WRDIVLM-HKQPRNIFVQPNTFHKGD------ 212
+ + G+F+ E LF S+ P R+I + K + I ++P F D
Sbjct: 83 LPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVSQKGSQQIIIRP--FEDVDIKNILK 140
Query: 211 AVEXKRYPATAEGMVASWVDRFPNTKVDDILEKLAKENSKYFAD 80
A+E RYP A + AS ++ P + ++LAK Y D
Sbjct: 141 AIEDSRYPFVANKLNASTIEVKPQRTTLESRQQLAKVLEGYAKD 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,717
Number of Sequences: 5004
Number of extensions: 43964
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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