Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C24
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical...    28   7.5  

>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 629 PVPFAVPVEKPVAYPVHVPVDRP 561
           P+P  VPV  PV  PV VP+  P
Sbjct: 8   PIPAPVPVPAPVPQPVPVPMPMP 30



 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 470 VDRPVAVPVKVPVDRPYPVTV 408
           V +PV VP+ +P+  P P+ V
Sbjct: 19  VPQPVPVPMPMPMPMPMPMPV 39



 Score = 23.4 bits (48), Expect(2) = 5.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 629 PVPFAVPVEKPVAYPVHVPVDRP 561
           P P  +P+  PV  P  VP   P
Sbjct: 2   PPPIPIPIPAPVPVPAPVPQPVP 24


>Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical protein
            F49B2.6 protein.
          Length = 1082

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 576  NMDGVGHWLLNWDSKRHWLLDGVRSRHMH 662
            N   +G W+  WD +R  L    R RH H
Sbjct: 1048 NEGQLGKWISRWDERRRTLYRRKRHRHHH 1076


>AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical
            protein F49B2.6 protein.
          Length = 1082

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 576  NMDGVGHWLLNWDSKRHWLLDGVRSRHMH 662
            N   +G W+  WD +R  L    R RH H
Sbjct: 1048 NEGQLGKWISRWDERRRTLYRRKRHRHHH 1076


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,103
Number of Sequences: 27780
Number of extensions: 211516
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)