Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C23
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   1.2  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    28   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   8.8  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   8.8  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   8.8  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 180 VNTPMHWYATFYGSINNRLRNSDGLN 103
           + TP H  AT YG+++N  R+++G++
Sbjct: 913 IYTPSHAQATLYGNMDNNDRDNEGIH 938


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 375 IMATVTCQKVHITPRTVVSGMEKATASREDTRDAVEELLEE 253
           ++   T +K +I P+TV + M+  T S +   D   E LEE
Sbjct: 606 LIKQATSEKGNILPKTVETHMKALTTSVDKVLDQTAEALEE 646


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
 Frame = -3

Query: 612 PVATVRETPRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKVVITKTDRTGKDFK 433
           P ++V  TP    + + A + +   + +  + +    + T  G   +  + +  TG+   
Sbjct: 530 PTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNSTITSSASGSTGEFTN 589

Query: 432 TDNMTATKIGMRTAPVATDIMATVTCQKVHITPR--TVVSGMEKATAS 295
           T++      G  T P +T +  +        T       SG+  ++AS
Sbjct: 590 TNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSAS 637


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 692 KDTSPVSPVTDKEDDCRKDGPSPELEXRWRP 600
           K+ +P      K+D+ +K+ P P+ E   +P
Sbjct: 220 KEAAPAKKAEKKKDEKKKNAPKPQAEAPAKP 250


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 336 PRTVVSGMEKATASREDTRDAVEELLEEQHAVRL 235
           PR V   + +   SR+  RD  +E LEE    RL
Sbjct: 358 PRNVADSLRRKDDSRKRARDRKKERLEEASQKRL 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,469
Number of Sequences: 5004
Number of extensions: 38804
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)