Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C23
         (938 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0970 + 7664552-7664570,7664696-7664733,7665661-7666510,766...    33   0.33 
11_06_0074 - 19821699-19823702                                         30   3.1  
06_03_1213 - 28463774-28464286                                         29   4.0  
01_06_0418 + 29210310-29210612,29211154-29211541,29211946-292121...    29   7.1  

>01_01_0970 +
           7664552-7664570,7664696-7664733,7665661-7666510,
           7666608-7666699
          Length = 332

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 414 TKIGMRTAPVATDIMATVTCQKV-HITPRTVVSGMEKATASREDTRDAVEELLEEQHAVR 238
           T  G    P    I+A  T +++  + PR V SG+ KA  +R    D  +    E   V 
Sbjct: 225 TAAGELVLPAFDKILAGCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVG 284

Query: 237 LGLPALNTTQGD 202
            GLP L   + D
Sbjct: 285 SGLPVLPIVEWD 296


>11_06_0074 - 19821699-19823702
          Length = 667

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 584 LGVSLTVATGXLTLDSVHLFCNRLLYRSRAKPAKYLLQATVTXK 715
           LG+++  A     + S+HL  + L+     KPA  LL A +T K
Sbjct: 138 LGIAMGCAKALSYMHSMHLSSSSLICHGDIKPANILLDANLTAK 181


>06_03_1213 - 28463774-28464286
          Length = 170

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = -3

Query: 405 GMRTAPVATDIMATVTCQKVHITPRTVVSGMEKATASREDTRDAVEELLEEQHAVRLGLP 226
           G+ TAP    ++A++   K     R +++   +A A R D + +VEELL+  +A +LGL 
Sbjct: 45  GLVTAPELRGLLASLGLDKPEHEVRDMLA---RADADR-DGKLSVEELLDVMNAGQLGLG 100

Query: 225 AL 220
           AL
Sbjct: 101 AL 102


>01_06_0418 +
           29210310-29210612,29211154-29211541,29211946-29212143,
           29212626-29213092,29213210-29213749,29214275-29214477,
           29214567-29214624
          Length = 718

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
 Frame = -3

Query: 567 SVAAAEAHRT-VIAAEALSLIVKAVTAIGADK---VVITKTDR------TGKDFKTDNMT 418
           ++  AEA +T  I+    + +V+A+  +  +K   V+I +++R      T KD +    T
Sbjct: 564 NLTVAEAMKTKYISVSKTTPVVEALNLMLVEKQPFVMIIESNRSLIGLVTLKDIQDFCRT 623

Query: 417 ATKIGMRTA-PVATDIMATVTCQKVHITPRTVVSGMEKATAS-REDTRDAVEELLEEQ 250
           A    ++T  PV T +   V C+   +TP+T ++ +EK   S   D    V E ++ Q
Sbjct: 624 AKTTRVQTEEPVQTYVCGAVKCKMWPVTPQTSLTTVEKIMDSYGVDQLPVVSEHVDRQ 681


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,032,863
Number of Sequences: 37544
Number of extensions: 282661
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)