Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C23
         (938 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -2

Query: 439 FQNRQYDGYQNRHANRTGG----DGYYGNGDVSEG 347
           F NRQ  GY N + N   G    +GYYGNG    G
Sbjct: 113 FGNRQQIGYNNVYGNGYYGNGYNNGYYGNGYYGNG 147


>Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical
           protein F35E12.7d protein.
          Length = 577

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 417 ATKIGMRTAPVATDIMATVTCQKVHITPRTVVSGMEKATAS 295
           AT++   TAPV + + +T+T Q +  T ++      K T S
Sbjct: 500 ATRVSSSTAPVVSTVTSTITSQSIVTTNKSSSPITSKTTTS 540


>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 417 ATKIGMRTAPVATDIMATVTCQKVHITPRTVVSGMEKATAS 295
           AT++   TAPV + + +T+T Q +  T ++      K T S
Sbjct: 500 ATRVSSSTAPVVSTVTSTITSQSIVTTNKSSSPITSKTTTS 540


>Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical
           protein C25G4.4 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 378 DIMATVTCQ-KVHITPRTVVSGMEKATASREDTRDAVEELLE 256
           DI +T+  +  V   PRT  S  E    +RE T + VEEL++
Sbjct: 363 DIQSTLAEEHSVKYQPRTSSSSQESLHTAREFTEEKVEELID 404


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 412 GSRHI--VCFEILPCSICFGNHHLVG 483
           G RH   +C+  L C+ C G HH  G
Sbjct: 655 GERHSSSMCYSTLKCTYCSGRHHPAG 680


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,687
Number of Sequences: 27780
Number of extensions: 230928
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)