Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C20
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    95   1e-20
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    76   5e-15
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    44   2e-05
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    28   1.8  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    26   7.3  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.6  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   9.6  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
 Frame = -3

Query: 692 VIAADGRLVYRSLVXPXSPVVDHNTRFSGIRPRDLARATKTLRDVQNDILGFVGTDTILI 513
           ++     ++Y   V P SPV D+ T++SGI    L   T  L DVQ+ +   V  +T+L+
Sbjct: 289 IVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTVDNNTVLL 348

Query: 512 GHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQR-GSNGHSPL 336
           GH+L +DL  LK  H  ++DT  +Y H RG P              R +Q+ G+ GH   
Sbjct: 349 GHSLNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAGALGHDSA 408

Query: 335 EDARAAMDLVLLKVQQEQA 279
           EDA A +DL+ LKV+   A
Sbjct: 409 EDALACVDLLKLKVKNGPA 427


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
 Frame = -3

Query: 689 IAADGRLVYRSLVXPXSPVVDHNTRFSGIRPRDLARATKTLRDVQNDI--LGFVGTDTIL 516
           + A   ++    + P   ++  NTRFSGI       +  T+  +   I  LG +  +TIL
Sbjct: 403 VVAKESIIMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELG-MNKNTIL 461

Query: 515 IGHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGSNGHSPL 336
           IGH LENDL A++L+H  V+DT  L+ HARG P               T+Q  ++ H   
Sbjct: 462 IGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQ--TSTHDSE 519

Query: 335 EDARAAMDLVLLKVQQEQA 279
           EDA +A+ LV  K +  ++
Sbjct: 520 EDAVSALQLVFYKTKSNES 538


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
 Frame = -3

Query: 695 AVIAADGRLVYRSLVXPXSPVVDHNTRFSGIRPRDLARATKTLRDVQNDILGFVGTDTIL 516
           +++   G +VY + V P   V D  T  SG++   + R   +   VQ ++   +  + +L
Sbjct: 114 SIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHM-RDAPSFEKVQAEVAKILD-NRVL 171

Query: 515 IGHALENDLRALKLLH-SAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGSNGHSP 339
           +GHA+ NDL+ L L H   ++   + +   R                       S  HS 
Sbjct: 172 VGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVILGRDIQSGQHSS 231

Query: 338 LEDARAAMDLVLLKVQQE 285
           ++DA+A M+L   KV++E
Sbjct: 232 VQDAQATMEL-YKKVKKE 248


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 421 NPRACGYKA-HVSTTALCNNFKARRSFSRACPIRIVSVPTNPSISFCTSRSVL-VARAKS 594
           N R  G+K  +V T+ L     A R  +    + ++  PTNP IS C  R+++ + R+K+
Sbjct: 113 NQRQYGFKVDNVDTSDLAAFEAALRPDTN---LVLIESPTNPRISICDIRAIVKITRSKA 169

Query: 595 R 597
           +
Sbjct: 170 K 170


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 622 TPVSR-ASGRATWRARLRRYETYKTIY*DSLELTQSLS 512
           TP SR A G+A  R+ +R Y   + +Y   +  TQ+L+
Sbjct: 149 TPYSRFADGKAVLRSSIREYLCCEALYALGIPTTQALA 186


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 338 MASDHCCLFVQYGPEAPRIGRVVIGALGILVRVDIK 445
           +AS  C +  Q    A  +GR ++G L  ++  D+K
Sbjct: 17  IASSGCNILGQPSSSAKSVGRAIVGGLESVLEWDLK 52


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 681 RWPSCIPITS 652
           +WP CIPITS
Sbjct: 48  KWPQCIPITS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,511
Number of Sequences: 5004
Number of extensions: 52569
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)