Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_C19
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 161 1e-40
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 161 1e-40
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.56
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 27 3.0
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 3.9
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 5.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 6.9
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.1
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 161 bits (391), Expect = 1e-40
Identities = 71/106 (66%), Positives = 91/106 (85%)
Frame = -2
Query: 662 MSSLKLQKRLAASVMRCGKKKVWXDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 483
M++L+ QKRLAASV++CGK+KVW DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 482 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVQRQRVLRKLL 345
R+RK A+R GRH G+GKR+GTA ARMP +W++RQRVLR+LL
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLL 106
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = -3
Query: 340 KYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 188
KYR + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 108 KYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 161 bits (391), Expect = 1e-40
Identities = 71/106 (66%), Positives = 91/106 (85%)
Frame = -2
Query: 662 MSSLKLQKRLAASVMRCGKKKVWXDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 483
M++L+ QKRLAASV++CGK+KVW DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 482 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVQRQRVLRKLL 345
R+RK A+R GRH G+GKR+GTA ARMP +W++RQRVLR+LL
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLL 106
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = -3
Query: 340 KYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 188
KYR + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 108 KYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.56
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 460 SVFLRTRAREWTATGFLMTRPSLIILRMFC 549
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 683 RGSHRVRMSSLKLQKRLAASVMRCGKKKVWXDPNEINEI 567
+G +++ K K L +S+ W D NE+NE+
Sbjct: 8 KGDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = +2
Query: 113 FLLLGGNT-----FLAALACLLYFIAAGL 184
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 383 VPSVAYAHWQYLFSYQS 433
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 222 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 314
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 540 DVLSGVGVCDLIDFIWIXPHLLFTTSHXRGCK 635
+VLS + ++D + PHLL +S + CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,012
Number of Sequences: 5004
Number of extensions: 58704
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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