Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C19
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   165   2e-41
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U55363-11|AAA97968.1|  299|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  165 bits (402), Expect = 2e-41
 Identities = 71/114 (62%), Positives = 96/114 (84%)
 Frame = -2

Query: 662 MSSLKLQKRLAASVMRCGKKKVWXDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 483
           MS+L+LQKRLA++V++CGK +VW DPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 482 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVQRQRVLRKLLPEVQNCQE 321
            R R+  EARRKGRH G+GKRRGTANARMP+K LW++R RVLR LL   ++ ++
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKK 114



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = -3

Query: 352 NCSLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 188
           N   +YR AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 104 NLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 566  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 432
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 162 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 58
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 115 PPSWRQYVPRGACVPPL 165
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>U55363-11|AAA97968.1|  299|Caenorhabditis elegans Hypothetical
           protein ZC404.10 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 203 LRPGLLSLLPVDVLHEHTLVLEHITLRLHVE*VV*MPVNLLGSSV-LQGAIFLEPFVFVP 379
           LR  LL  +PV +   H ++L H+ +      +   P++L  S + L+ AIFL   +F  
Sbjct: 160 LRIALLLCIPVFIFGSHNVLLNHVEIENGTIVLNISPLSLANSCLFLKLAIFLNG-LFFK 218

Query: 380 IVPSV 394
           IVP +
Sbjct: 219 IVPCI 223


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 554 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 441
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical
           protein W02B8.4 protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 314 VNLLGSSVLQGAIFLEPFVFVPIVPS 391
           V L+ S  + GA+ L P+VFVP++ S
Sbjct: 583 VPLIQSPAVFGAVILSPWVFVPVIIS 608


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 141 RNVLPPRRRNCCRPSLEKTKPRLP 70
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,606
Number of Sequences: 27780
Number of extensions: 354551
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)