Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C17
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    29   1.0  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    27   3.2  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    27   4.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   7.3  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    26   7.3  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   9.7  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 293 HNCHFKVPQK----L*TYNYCLPCIYTFVENIYNLLY*INTFTDTLVRRTRTHEEQ 448
           HN H   P      L  Y Y    I+ ++ +++ L Y +NTF D  +++    ++Q
Sbjct: 284 HNYHHAFPNDYRNGLRWYEYDPTKIFIYIASLFGLAYNLNTFPDNEIQKGIVQQKQ 339


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 170 SHDSCWNTNILFFGLRIIYIDCTVYCSDL 84
           SH   W   +++ GL I+ +    YCS L
Sbjct: 140 SHSEIWGPIVIYVGLFILLLSAFNYCSKL 168


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 542 SQFRFEYIKILVRQNSRNSSSFLTKQTHTEGLIS 643
           SQF   Y   LV ++SRNSSS L K+++    +S
Sbjct: 19  SQFSC-YSNTLVLRSSRNSSSSLVKRSYVSSRVS 51


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +3

Query: 240 RHKINLKTK--THFKDTSLYTIVILKFLKNSKLTITACHVFTHL*KIFTTYCIK*THSQT 413
           R+  N++ +  T  K   +     L  ++   +TI + H+       F T CI   +   
Sbjct: 270 RYSTNMRDRLFTEAKIPLIICFFALFVVRFFAITIQSIHLGLWFCFFFLTACISALYILF 329

Query: 414 HSFVVLERTKNNVINKLY*SIHSL 485
            +FV L  T   ++ + Y ++HS+
Sbjct: 330 GAFVALPSTLRALVEQRYYTLHSI 353


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 542 SQFRFEYIKILVRQ--NSRNSSSFLTKQTHTEGLISTVLTD 658
           S+   E I+ L+ Q  N  N+ SFL + + +  L+  +LTD
Sbjct: 209 SKEMIEQIQFLISQDHNGLNAGSFLVRNSRSIALLMDLLTD 249


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 627 VCVCLVKKEEEFLEFWRTRIFIYSNL 550
           +C  L KKE  +L+ WR ++ IY  L
Sbjct: 4   ICSILPKKEPSYLKLWRKQV-IYQVL 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,688
Number of Sequences: 5004
Number of extensions: 62434
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)