Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C17
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    29   3.0  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    29   3.0  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    29   3.0  

>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 560 YIKILVRQNSRNSSSFLTKQTHTEGLISTVLTDQFVNPSSC 682
           +++ LV   +    SFLTK  + +G+   +  + ++NPS C
Sbjct: 30  HVETLVNTKNGGDPSFLTKFVNDKGIPQGLKGENYINPSFC 70


>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 190 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVT*KRKLITYNCCS 50
           W KYF+  + + G  TFY  +  L  ++  F +VT    L  ++ CS
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVT---GLFNFSGCS 195


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 190 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVT*KRKLITYNCCS 50
           W KYF+  + + G  TFY  +  L  ++  F +VT    L  ++ CS
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVT---GLFNFSGCS 195


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 190 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVT*KRKLITYNCCS 50
           W KYF+  + + G  TFY  +  L  ++  F +VT    L  ++ CS
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVT---GLFNFSGCS 195


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 190 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVT*KRKLITYNCCS 50
           W KYF+  + + G  TFY  +  L  ++  F +VT    L  ++ CS
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVT---GLFNFSGCS 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,427,959
Number of Sequences: 27780
Number of extensions: 349085
Number of successful extensions: 601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)