Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C16
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    69   8e-13
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    30   0.35 
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    29   0.61 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 37/65 (56%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = -1

Query: 763 STAXXELFKXXSXQLPLCSGAR-FFALXTGEGMDEMEFTEAESNMXDLVSEYXQYQEATA 587
           ST+  E+F+    Q       + F    TGEGMDEMEFTEAESNM DLVSEY QYQEA  
Sbjct: 371 STSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGI 430

Query: 586 DEDAE 572
           DE  E
Sbjct: 431 DEGDE 435


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 763 STAXXELFKXXSXQLPLCSGARFFA-LXTGEGMDEMEFTEAESNMXDLVSEYXQYQEATA 587
           +T+  E +     +  L    R F     GEGM+E EF+EA  ++  L  +Y +  + + 
Sbjct: 385 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSM 444

Query: 586 DED 578
           D +
Sbjct: 445 DNE 447


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 763 STAXXELFKXXSXQLPLCSGARFFA-LXTGEGMDEMEFTEAESNMXDLVSEYXQYQEATA 587
           +T+  E +     +  L    R F     GEGM+E EF+EA  ++  L  +Y +  + + 
Sbjct: 381 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSM 440

Query: 586 DED 578
           + D
Sbjct: 441 EVD 443


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 426 SYYINTKSKSIVDLSKGERWKGG 494
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 453 FCFSYLYSNFNSFRLQHA**NNLGSTR 373
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,565
Number of Sequences: 5004
Number of extensions: 43198
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)