Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C14
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.61 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   10.0 
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   10.0 
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   10.0 

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
 Frame = -1

Query: 745 PXHXAPXPASGXXXPKXAVGTPCSL--PRGPCSVXGRPSCLPRGPCSV-TRPPQLPTTLL 575
           P    P PAS    P  A   P SL  P  P +    P   P  P +V   PP++P   L
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206

Query: 574 HSXTPRLNLSRPKT 533
                    SRP +
Sbjct: 207 SQAPVANTSSRPSS 220


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 116 SSVLPPLIFLVI*DCCYDL 60
           SS++PP++FL++ +  YDL
Sbjct: 155 SSLVPPVVFLIMKESGYDL 173


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -1

Query: 244 SFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKAL 122
           S H ADG  R +     D  G    V N+ P+ A   +  L
Sbjct: 34  SDHSADGETRPIAIEMKDSKGNTVPVGNSRPSKASNWLAGL 74


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 658 CSVXGRPSCLPRGPCSVTRPPQLPTTLLHS-XTPRLNLSR 542
           C +   PS LP G      PP    T +HS  T  L LS+
Sbjct: 651 CLIRAGPSPLPNGFVGYVLPPVYKITQIHSGDTELLQLSQ 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,049
Number of Sequences: 5004
Number of extensions: 30812
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)