Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C14
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    33   0.28 
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010...    33   0.37 
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    31   1.5  
06_03_0905 + 25843547-25844314                                         31   1.5  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    29   4.5  

>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 23/66 (34%), Positives = 26/66 (39%)
 Frame = -1

Query: 730 PXPASGXXXPKXAVGTPCSLPRGPCSVXGRPSCLPRGPCSVTRPPQLPTTLLHSXTPRLN 551
           P P  G   P  + GT  S P G CS    P   P  P S T  P  P    +  TP + 
Sbjct: 459 PAPTIGNVPPSPSSGTSPSTPGGGCSSSPTPCDAPPSPSSDT-SPTTPGGGYYPPTPSIG 517

Query: 550 LSRPKT 533
            S P T
Sbjct: 518 TS-PST 522


>10_08_1019 -
           22299800-22299946,22300040-22300109,22300930-22301066,
           22301142-22301195,22301638-22301694,22301814-22301846,
           22301942-22302067,22302162-22302815,22303042-22303166,
           22303770-22303935
          Length = 522

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 637 SCLPRGPCSVTRPPQLPTTLLHSXTPRLNLSRPKTSSVMTSPR 509
           +C+PR    +TRP   P+++ H   PR    +P+ ++   + R
Sbjct: 153 ACIPRSGAPLTRPRTAPSSVPHQPPPRREAPQPQVANAAVAER 195


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -1

Query: 733  APXPASGXXXPKXAVGTPCSLPRGPCSVXGRPSCLPRGPC-SVTRPPQLPTTLLHSXT-P 560
            +P P      P  +  +P   P  P    G P+  P  P  S T P   PT+  +S T P
Sbjct: 1559 SPGPGYSPTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSP 1618

Query: 559  RLNLSRPKTSSVMTSP 512
              + + P  S   TSP
Sbjct: 1619 SYSPTSPSYSP--TSP 1632


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 670 PRGPCSVXGRPSCLPRGPCSVTRPPQL--PTTLLHSXTPRLNLSRPKTSSVMTSP 512
           P+GP +   RP   P  P  VTRPP L  P  +  +  P+  ++RP   +  T P
Sbjct: 53  PKGPKNPTPRPPKGPTYPSPVTRPPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPP 107


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 531  DVLGRDRFSRGVXEWRSVVGNWGGLVTLQGPRGRQLGRP 647
            DVL R R S GV  WR ++     +  L GP G  L  P
Sbjct: 1857 DVLNRHRVSTGVRAWRHLLHCLTEMDRLYGPFGEPLCAP 1895


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,957
Number of Sequences: 37544
Number of extensions: 240203
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)