Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C14
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    30   1.8  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    30   1.8  
U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical pr...    30   1.8  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    30   1.8  
AF003142-8|AAB54185.2|  205|Caenorhabditis elegans Hypothetical ...    30   2.3  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   5.4  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    28   9.4  

>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 694 AVGTPCSLPRGPCSVXGRPSCLPRGPCS 611
           A+G PC+ P  P      P+C+P   CS
Sbjct: 220 ALGAPCAAPVAPVYASAAPACVPGAVCS 247


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -1

Query: 688 GTPCSLPRGPCSVXGRPSC--LPRGPCSVTRPPQLPTTLLHSXTPRLNLSRPKTSSVMTS 515
           GTP   P  PC     P C   P+GP     PP  P     + TP     RP T +   S
Sbjct: 129 GTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP----GRPGTDAAPGS 184

Query: 514 P 512
           P
Sbjct: 185 P 185


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -1

Query: 688 GTPCSLPRGPCSVXGRPSC--LPRGPCSVTRPPQLPTTLLHSXTPRLNLSRPKTSSVMTS 515
           GTP   P  PC     P C   P+GP     PP  P     + TP     RP T +   S
Sbjct: 124 GTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP----GRPGTDAAPGS 179

Query: 514 P 512
           P
Sbjct: 180 P 180


>U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical
           protein T25G12.6 protein.
          Length = 880

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 685 TPC-SLPRGPCSVXGRPSCLPRGPCSVTRPPQLPTTLLHSXTPRLNLSRPKTSSVMTSPR 509
           TPC S+P GP      P  +P    SV+R  + P T     T   +LS    + V  SPR
Sbjct: 218 TPCASVPTGPTKT---PVTVPTSTGSVSRETKSPVTANPGSTVSTSLSSKPVTVVTQSPR 274


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -1

Query: 688 GTPCSLPRGPCSVXGRPSC--LPRGPCSVTRPPQLPTTLLHSXTPRLNLSRPKTSSVMTS 515
           GTP   P  PC     P C   P+GP     PP  P     + TP     RP T +   S
Sbjct: 124 GTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP----GRPGTDAAPGS 179

Query: 514 P 512
           P
Sbjct: 180 P 180


>AF003142-8|AAB54185.2|  205|Caenorhabditis elegans Hypothetical
           protein F57C9.2 protein.
          Length = 205

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -1

Query: 679 CSLPRGPCSVXGRPSCLPRGPCSVTRPPQLPTTLLHSXTPRLNLSRPKTSSVMTSPR 509
           C    G C       C   G   +T+P    TT   S TP   +SR +T S  +SPR
Sbjct: 118 CVCKDGECQNDFPGDCPINGITDITKPTITSTTSPPSSTPPSLISRNRTRSNNSSPR 174


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 667 RGPCSVXGRPSCLPRGPCSVTRPPQLP 587
           RG C     P C PR PC+   P  +P
Sbjct: 24  RGGCGGCPTPMCQPRMPCAAPMPMPMP 50


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
 Frame = -1

Query: 751 FFPXHXAPXPASGXXXPKXAVGTPCSLPRGPCSVXGRPSCLP--RG-PCSVTRPPQLPTT 581
           F   +  P P+S    P     T   LP G  +   +PSCLP  RG P S    P+   T
Sbjct: 85  FHHQYTCPKPSSESAFPFPISPTQIDLPFGHTAHDRKPSCLPTPRGSPNSPRLTPEDEMT 144

Query: 580 LLHSXTPRLNLSRPKTSSVMTS 515
           +          + P TSS  +S
Sbjct: 145 VKRLFDKLEIPTTPATSSASSS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,220,710
Number of Sequences: 27780
Number of extensions: 184138
Number of successful extensions: 581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)