Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_C13
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 57 2e-09
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 37 0.003
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 35 0.011
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 31 0.14
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 29 0.76
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 29 0.76
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 29 1.00
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 1.3
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 28 1.3
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 28 1.7
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.3
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 3.0
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.0
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 3.0
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 4.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.0
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.3
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 5.3
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 5.3
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 5.3
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 5.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 7.0
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 7.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 7.0
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 7.0
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 26 7.0
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 9.3
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 9.3
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.3
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 57.2 bits (132), Expect = 2e-09
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = -2
Query: 448 LKPSLLAADLDVLQRHDQAVIGKVYTGVIYAI-RDYILVSFFNNLMAYVPKTMVSIEPIE 272
LK SLL DL ++ ++QA G G + I D +V F+N++ A++P + +S I
Sbjct: 558 LKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIR 617
Query: 271 NLTEAFHVGQIVSCTILNVDIENKKL 194
+ E F VGQ +S TI++ D EN+K+
Sbjct: 618 DAREHFKVGQTLSVTIVSCDPENRKM 643
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -2
Query: 343 ILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSCTILNVDIENKKLLGSLIP 176
+ V F + L+A VPK +S E + + + Q V+C L+V++ +K S P
Sbjct: 776 VFVEFCDGLVALVPKAYISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFKP 831
Score = 29.1 bits (62), Expect = 0.76
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 406 RHDQAVIGKVYTGVIYA-IRDYILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSC 230
R + +G+ G I I I+V+ + VP T ++ ++ F VG V C
Sbjct: 483 RIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKC 542
Query: 229 TILNVDIENKKLLGSL 182
+L+ ++ K++L +L
Sbjct: 543 RVLSTNVLRKRVLLTL 558
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = -1
Query: 164 SDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDKKKK 6
S ++ +K K+K S + E D+G + + EKDK K K++ + DAP K +K
Sbjct: 145 SSEKSKKKKKKSKSKDDGSEALDDGDIE-SSEKDKKKKKKSKENDDAPKKDRK 196
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -1
Query: 203 QETAGQPHTDADLSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTL 39
QE+ G H D D + +K+ KH+ +GEE + E+E + +EE + + +++
Sbjct: 340 QESLGIFHYDPDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESV 394
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -1
Query: 161 DQQKRKAKEKHDSIGEERETEDEGATQINEEKDK-----PKNKQTLASGDAPDKKKKK 3
+++ ++AKE + EE E EG + EE+++ P K T DAPD K+ K
Sbjct: 110 EKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDPLEKMTQECMDAPDCKEVK 167
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 29.1 bits (62), Expect = 0.76
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = -1
Query: 188 QPHTDADLSDQQKRKAKEKHDSIGEERETEDE----GATQINEEKDKPKNKQTLASGDAP 21
QP+ D + + + + +E++++ + G ++ +KDK K+K+ + +
Sbjct: 623 QPNIDVPSTRYENTSSSDAVSIHKDEKKSKGKSHKLGKLMMSSKKDKDKSKEKVPTYGTS 682
Query: 20 DKKKKK 3
DKKKKK
Sbjct: 683 DKKKKK 688
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 540 PKLTKKFKVGQQVRARVLXRGPCQAG 463
P L K+F+VG ++ R+L RG G
Sbjct: 137 PSLQKRFQVGDELELRILKRGSAPGG 162
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 28.7 bits (61), Expect = 1.00
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 164 SDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDKKKKK 3
SDQ K KEK GE + D+G ++NE+ K T + + KK+K
Sbjct: 16 SDQTKESRKEKKRKKGERKNVGDKG-EKLNEKVLKKAKSVTTNNSLKSEIKKEK 68
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -1
Query: 203 QETAGQPHTDADLSDQQKRKAKEKHDSIGE-----ERETEDEGATQINEEKDKPKNKQTL 39
+E + +DAD SD+++ +++E + E E E EDE + + +E ++ K +Q
Sbjct: 945 EEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELER-KARQED 1003
Query: 38 ASGDAPDKKKKK 3
A DA +++ K
Sbjct: 1004 AKHDAFEERPSK 1015
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = -1
Query: 197 TAGQPHTDADLSDQQKRKAKEKHDSIGEERETED----EGATQINEEKDKPKNKQT 42
T G+ D+ K+K K K S E +TED G + K K K K++
Sbjct: 69 TEGEVDELKDMFSSMKKKKKSKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKS 124
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Frame = -1
Query: 176 DADLSDQQKRKAKEKHDSIGEERETEDEGA----------TQINEEKDKPKNKQTLA--- 36
DA SD+ KR+ ++KH S + ++ G+ T+ +++ K K+K++ +
Sbjct: 156 DASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKR 215
Query: 35 ---SGDAPDKKKKK 3
S D +KKKKK
Sbjct: 216 KSGSSDKEEKKKKK 229
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = -1
Query: 227 DTECGYREQETAGQPHTDADLSDQQKRKAKEKHDSIGEERETEDE 93
D+E E+ET + D+++SD+ + +++ + +S EE E+E+E
Sbjct: 84 DSESSEEEEET--ESEEDSEVSDESESESESESES-EEESESEEE 125
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 335 VVLQQPDGVRSEDDGLDRADREPNRGLPCRTDCELHDTECGYREQ-ETAGQPHTDADLSD 159
V Q D + D+ D +PN+ L C + + +D E+ E + + ++
Sbjct: 518 VAFGQLDNGNTSSRARDK-DADPNKSLSCSVEDKHYDLHSAVAEENEEVDEELLNVPSNN 576
Query: 158 QQKRKAKEKHDSIGEERETED 96
Q K + D++ EE E+ +
Sbjct: 577 QGKSYRRFSSDAVWEEPESNE 597
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 385 GKVYTGVIYAIRDYILVSFFNNLMAYVP 302
G IY I Y L SF NN+ +Y P
Sbjct: 282 GTATNSSIYEISPYYLTSFDNNVRSYTP 309
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 185 PHTDADLSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDKKKK 6
P +A+++ + K K S+ + EDE A + + + K K+ + +KK+K
Sbjct: 413 PTVEAEVNGVEDSK---KRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEK 469
Query: 5 K 3
K
Sbjct: 470 K 470
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -1
Query: 140 KEKHDSIGEERETEDEG---ATQINEEKDKPKNKQ 45
K+KH+++GE ED+G A+++ E + K K+
Sbjct: 29 KDKHENVGENVSDEDDGNYIASKLLESNRRTKGKK 63
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 185 PHTDADLSDQQKRKAKEKHDSIG--EERETEDEGATQINEEKDKPKNKQTLAS 33
P+ ++ +A ++ +S+ E+ E EDE + +EEK +P +K++ S
Sbjct: 191 PNAVKYFTEAMTEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKKS 243
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = -1
Query: 338 GVVLQQPDGVRSEDDGLDRADREPNRGLPCRTDCELHDTECGYREQETAGQPHTDADLSD 159
GV + P S D LD + + + RT+ + DT+ ++ G H+ + D
Sbjct: 681 GVKISVPSAKMSYKD-LDYVELMTGKKVYSRTERK-KDTQ---KQSHDHGHSHSKSH--D 733
Query: 158 QQKRKAKEKHDSIGEERETEDE 93
++K K K+K + RETE+E
Sbjct: 734 REKEKEKKKDREHRKHRETEEE 755
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/101 (17%), Positives = 38/101 (37%)
Frame = -1
Query: 305 SEDDGLDRADREPNRGLPCRTDCELHDTECGYREQETAGQPHTDADLSDQQKRKAKEKHD 126
SEDD + + +D ++ G +TD S + ++
Sbjct: 279 SEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNST 338
Query: 125 SIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDKKKKK 3
S E +DE +++I+++ K K++ +S + K
Sbjct: 339 SSEESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRTTK 379
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -2
Query: 172 QTFRINRNVKPKRSTIQSEKRGKPKTREQHKLMRKKINQKINRH*RAETLLTKKKKK 2
+T RI R K +I KRG KTR RK I + N + E L + K
Sbjct: 339 RTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRARKLIGKAGNALLQQELALEGHRAK 395
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 396 WSWRCSTSRSAARRDGFRGQHEGRLGRVHGTAPSRGP 506
WS + RS A + RG HEG GR G S GP
Sbjct: 926 WSGNGNFPRSNASYNS-RGGHEGYGGRSRGGGYSNGP 961
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 215 GYREQETAGQPHTDADLSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQT 42
G E + AGQ Q R++ + + GEE +E+E + EE++ + +T
Sbjct: 273 GMDEDDLAGQIEQGMLELSQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEADDET 330
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 163 ERSASV*GCPAVSCSRYPHSVSC 231
ER+ V GC SC R P+S+ C
Sbjct: 75 ERALYVWGCHNPSCRRVPNSIVC 97
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = -2
Query: 376 YTGVIYAIRDYILV---SFFNNLMA---YVPKTMVSIEPIENLTEAF 254
YTG +YA+ + L +F ++++A + + V +EPIE+ EA+
Sbjct: 387 YTGHLYALFAFKLSHDEAFISSILACFTFFSRDKVHVEPIEDCNEAY 433
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 155 QKRKAKEKHDSIGEERETEDEGAT-QINEEKDKPKNKQTLASGDAPD 18
Q +E+ S G+ER E+E Q+N+EK + + T + A +
Sbjct: 225 QSGNDEEEIFSWGDERSDEEESDNEQVNDEKKQSSEEDTTENNSAAE 271
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/59 (16%), Positives = 27/59 (45%)
Frame = -1
Query: 179 TDADLSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDKKKKK 3
++++ ++ K +EK + E + + +E D + + + + D+KK+K
Sbjct: 182 SESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRK 240
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -1
Query: 167 LSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDKKKKK 3
L D+++R+ KE + E+ + E E I E+K K +N+Q + D K+K+
Sbjct: 130 LKDEEERRKKE----LMEKEKKEKERIRLIEEQKHK-ENEQRRLKQEQIDAKRKE 179
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 170 DLSDQQKRKAKEK----HDSIGEERETEDEGATQINEEKDK 60
DL + +K K ++ HD G+E + +D+G T+ + K
Sbjct: 103 DLEELKKLKGQKVIRLVHDESGDEEQNDDDGLTEAQDAVQK 143
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/73 (19%), Positives = 33/73 (45%)
Frame = -1
Query: 221 ECGYREQETAGQPHTDADLSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQT 42
E Y + ++ D + K+ ++ +S ++ E++G ++ D+
Sbjct: 134 EIEYAKTKSLFHEREAQDAIETMKKMKRDVKNSPIMKKSHEEDGDNKLLSSSDQLAKSTK 193
Query: 41 LASGDAPDKKKKK 3
A+ ++P KKK+K
Sbjct: 194 HAAKNSPSKKKRK 206
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 182 HTDADLSDQQKRKAKEKHDSIGEERETEDEGATQINEEKDKPK 54
+T + QQKRK+K+ + + ++RE E ++I + + K
Sbjct: 9 YTQTTIPTQQKRKSKKMEELLSKQREECKELQSKITNLRKQLK 51
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 9.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 149 RKAKEKHDSIGEERE-TEDEGATQINE-----EKDKPKNKQTLASGDAPDKKKK 6
++ +K + I E + TE E A +I+ K KPK K TL P+K K
Sbjct: 716 QRVAKKAEGISESGDMTESEKAKEISRLVSRATKSKPKAKPTLVVAKGPNKGLK 769
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 330 NDTSI*SRIAYMTPVYTFPITAWSW 404
+++SI +++T +YTFP T +W
Sbjct: 626 DNSSIEQSSSFLTKLYTFPFTIITW 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,281
Number of Sequences: 5004
Number of extensions: 53370
Number of successful extensions: 266
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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