Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C12
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23527-2|AAP40525.1|  300|Caenorhabditis elegans Neuronal igcam ...    30   2.4  
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    30   2.4  
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    29   5.4  

>U23527-2|AAP40525.1|  300|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform b protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -3

Query: 177 IHPHGHPFHPQETTAPHMLVLY---LPTQDKNSSHPGLPKGEPNFAPYNYPPYRAY 19
           +H     + P+  T+  MLV Y    P  + NSS P +         YNYP    Y
Sbjct: 158 VHSTARCYSPESRTSHEMLVSYSQSAPHSNANSSSPQMNGSMQRVKAYNYPDSLLY 213


>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
            protein 1, isoform a protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -3

Query: 177  IHPHGHPFHPQETTAPHMLVLY---LPTQDKNSSHPGLPKGEPNFAPYNYPPYRAY 19
            +H     + P+  T+  MLV Y    P  + NSS P +         YNYP    Y
Sbjct: 1005 VHSTARCYSPESRTSHEMLVSYSQSAPHSNANSSSPQMNGSMQRVKAYNYPDSLLY 1060


>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 379 SRHFEESLRLANQKRGERNNLTWSIMHSLTPNRAAPAPEHDRLRVPT 239
           +R   + +++ +     +    W +  S TPN AA  P H  L+ P+
Sbjct: 300 ARGGSDDVKIEDTPSASKRRSRWDLTPSQTPNVAAATPLHSGLQTPS 346


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 379 SRHFEESLRLANQKRGERNNLTWSIMHSLTPNRAAPAPEHDRLRVPT 239
           +R   + +++ +     +    W +  S TPN AA  P H  L+ P+
Sbjct: 300 ARGGSDDVKIEDTPSASKRRSRWDLTPSQTPNVAAATPLHSGLQTPS 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,628,915
Number of Sequences: 27780
Number of extensions: 204123
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)