Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C09
         (797 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P50213 Cluster: Isocitrate dehydrogenase [NAD] subunit ...    46   0.001
UniRef50_Q8LG77 Cluster: Isocitrate dehydrogenase [NAD] catalyti...    39   0.13 
UniRef50_UPI0000E25505 Cluster: PREDICTED: similar to Isocitrate...    36   1.6  
UniRef50_O43837 Cluster: Isocitrate dehydrogenase [NAD] subunit ...    36   1.6  
UniRef50_Q0QHL0 Cluster: Isocitrate dehydrogenase (NAD+) 2; n=1;...    35   2.1  
UniRef50_Q1IJA8 Cluster: Isocitrate dehydrogenase; n=3; Bacteria...    35   2.7  
UniRef50_A6LM12 Cluster: Putative uncharacterized protein; n=1; ...    34   3.6  
UniRef50_P28834 Cluster: Isocitrate dehydrogenase [NAD] subunit ...    34   4.8  

>UniRef50_P50213 Cluster: Isocitrate dehydrogenase [NAD] subunit
           alpha, mitochondrial precursor (EC 1.1.1.41) (Isocitric
           dehydrogenase) (NAD(+)-specific ICDH); n=62;
           Eukaryota|Rep: Isocitrate dehydrogenase [NAD] subunit
           alpha, mitochondrial precursor (EC 1.1.1.41) (Isocitric
           dehydrogenase) (NAD(+)-specific ICDH) - Homo sapiens
           (Human)
          Length = 366

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = -1

Query: 779 QIXAACFHXLREGKVLTQDLGGKSTCTDFXKXIIKNLK 666
           +I AACF  +++GK LT+DLGG + C+DF + I + +K
Sbjct: 326 RIEAACFATIKDGKSLTKDLGGNAKCSDFTEEICRRVK 363


>UniRef50_Q8LG77 Cluster: Isocitrate dehydrogenase [NAD] catalytic
           subunit 6, mitochondrial precursor (EC 1.1.1.41)
           (Isocitric dehydrogenase 6) (NAD(+)-specific ICDH 6);
           n=10; cellular organisms|Rep: Isocitrate dehydrogenase
           [NAD] catalytic subunit 6, mitochondrial precursor (EC
           1.1.1.41) (Isocitric dehydrogenase 6) (NAD(+)-specific
           ICDH 6) - Arabidopsis thaliana (Mouse-ear cress)
          Length = 374

 Score = 39.1 bits (87), Expect = 0.13
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = -1

Query: 779 QIXAACFHXLREGKVLTQDLGGKSTCTDFXKXIIKNL 669
           QI +A  + + EGK  T DLGG ST TDF K I  +L
Sbjct: 338 QIHSAIINTIAEGKYRTADLGGSSTTTDFTKAICDHL 374


>UniRef50_UPI0000E25505 Cluster: PREDICTED: similar to Isocitrate
           dehydrogenase 3 (NAD+) beta isoform 8; n=1; Pan
           troglodytes|Rep: PREDICTED: similar to Isocitrate
           dehydrogenase 3 (NAD+) beta isoform 8 - Pan troglodytes
          Length = 331

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = -1

Query: 752 LREGKVLTQDLGGKSTCTDFXKXIIKNLK 666
           ++ GKV T+D+GG ST TDF K +I +L+
Sbjct: 299 IKVGKVRTRDMGGYSTTTDFIKSVIGHLQ 327


>UniRef50_O43837 Cluster: Isocitrate dehydrogenase [NAD] subunit
           beta, mitochondrial precursor (EC 1.1.1.41) (Isocitric
           dehydrogenase) (NAD(+)-specific ICDH); n=61;
           Fungi/Metazoa group|Rep: Isocitrate dehydrogenase [NAD]
           subunit beta, mitochondrial precursor (EC 1.1.1.41)
           (Isocitric dehydrogenase) (NAD(+)-specific ICDH) - Homo
           sapiens (Human)
          Length = 385

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = -1

Query: 752 LREGKVLTQDLGGKSTCTDFXKXIIKNLK 666
           ++ GKV T+D+GG ST TDF K +I +L+
Sbjct: 353 IKVGKVRTRDMGGYSTTTDFIKSVIGHLQ 381


>UniRef50_Q0QHL0 Cluster: Isocitrate dehydrogenase (NAD+) 2; n=1;
           Glossina morsitans morsitans|Rep: Isocitrate
           dehydrogenase (NAD+) 2 - Glossina morsitans morsitans
           (Savannah tsetse fly)
          Length = 372

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 767 ACFHXLREGKVLTQDLGGKSTCTDFXKXIIKNL 669
           A    L EGKV T+DLGG +T  +F + +I N+
Sbjct: 339 AIIRVLSEGKVRTKDLGGNATTQEFTRAVIANI 371


>UniRef50_Q1IJA8 Cluster: Isocitrate dehydrogenase; n=3;
           Bacteria|Rep: Isocitrate dehydrogenase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 348

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -1

Query: 779 QIXAACFHXLREGKVLTQDLGGKSTCTDFXKXIIK 675
           ++ AA  H  REGK LT+D+GG ++ ++F   +++
Sbjct: 296 RVKAAVHHVYREGKHLTRDMGGTTSTSEFADKVVE 330


>UniRef50_A6LM12 Cluster: Putative uncharacterized protein; n=1;
           Thermosipho melanesiensis BI429|Rep: Putative
           uncharacterized protein - Thermosipho melanesiensis
           BI429
          Length = 853

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = +2

Query: 443 TNIKGNIKF*KIPNCDYLSNSLNVLIKMMNTLKAVT--K*NLDHIINTQN-IQWEIKKKK 613
           + IKG + F  +P   +    +N LI  +  +K     K +  ++IN+ + I+ EI KKK
Sbjct: 357 SEIKGLLNFSDVPQRPFSEEEINRLINEIFEIKGFLEKKDSNGNLINSLSFIEQEIGKKK 416

Query: 614 ETSFNVTTKQRPDIL 658
           +   N+TTK+  +++
Sbjct: 417 KLINNITTKENTELI 431


>UniRef50_P28834 Cluster: Isocitrate dehydrogenase [NAD] subunit 1,
           mitochondrial precursor (EC 1.1.1.41) (Isocitric
           dehydrogenase) (NAD(+)-specific ICDH); n=32;
           Dikarya|Rep: Isocitrate dehydrogenase [NAD] subunit 1,
           mitochondrial precursor (EC 1.1.1.41) (Isocitric
           dehydrogenase) (NAD(+)-specific ICDH) - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 360

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 779 QIXAACFHXLREGKVLTQDLGGKSTCTDFXKXIIKNL 669
           +I  A    + EGK  T+D+GG S+ TDF   II  L
Sbjct: 321 RISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 357


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,846,002
Number of Sequences: 1657284
Number of extensions: 13269479
Number of successful extensions: 28981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28959
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)