Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C09
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    36   0.007
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    33   0.063
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    26   7.2  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   7.2  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   7.2  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.5  

>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -1

Query: 776 IXAACFHXLREGKVLTQDLGGKSTCTDFXKXIIKNLK 666
           I AA +  + EGK LT+DLGG ++  DF   I++ ++
Sbjct: 318 INAATYSVIEEGKTLTKDLGGSASTGDFTHAILERME 354


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 776 IXAACFHXLREGKVLTQDLGGKSTCTDFXKXIIKNL 669
           I  A    L EGKVLT DLGGKS   +    ++ N+
Sbjct: 325 IYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANI 360


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 782 RQIXAACFHXLREGK-VLTQDLGGKSTCTDFXKXIIKNLK 666
           ++I +A F  L       T+DLGGKS    +   II  LK
Sbjct: 339 KRIESAIFDTLANNPDARTKDLGGKSNNVQYTDAIISKLK 378


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 271 NNRLSINLYLMQVLNRIL*RRRLYSNQFVLTYQ*HFFVQMHRLPPLIIDDSFLLSQLY 444
           N+ LSI+ + M  L +IL +R LY N  +L    +   +  R    + DDS  + Q+Y
Sbjct: 317 NDELSIDFH-MAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVKFLEDDSEKVVQVY 373


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 543 RLRNKTWTTLLTRKIFSGKLRKKKKLALTS-QPNSDQTSSDLLQ 671
           +LRNK + TLL   I  G + + +K+++   + N D+    L+Q
Sbjct: 722 QLRNKLFLTLLEDSIGDGDVTEDEKISIARLEANIDKALLQLIQ 765


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 377 FLSKCTDCHL***TTHFYYLSYTNIKGNI 463
           F+S C+DC +     H+Y + ++N++  I
Sbjct: 416 FMSACSDCKIDFIACHWYGIDFSNLQDYI 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,989
Number of Sequences: 5004
Number of extensions: 57323
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)