Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C06
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    28   1.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   4.4  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   5.8  
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf...    26   7.6  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -1

Query: 386 CARWKEGHTGYMAVYN-PSRQDLHANLTAVPSVPGTITIQNVSPAVKLVTNYTKNYQPAE 210
           C    +    +  V N P +     +L +VPS P +   +   P+   V +++ NY  + 
Sbjct: 259 CPSTPDEQKNFFIVGNAPQQTPARPSLRSVPSYPSSNNQRR--PSASRVRSFS-NYVKSS 315

Query: 209 DVLVPAKSTVVVSYVPIKHEKREKD 135
           +V+ P+ S   +  +P K  KR+ +
Sbjct: 316 NVVNPSLSQASLEIIPRKSMKRDSN 340


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 67  KNIV*KQNHCKMQTNCFTLTIYSSFSRFSCFIGT*DTTTVDLAGTS 204
           KN V  +NH      CF L +YS    +S F+    T T + A  S
Sbjct: 131 KNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKTFTAEGANIS 176


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
 Frame = -1

Query: 377 WKEGHTGYMAVYNPSRQ-----DLHA----NLTAVPSVPGTITIQNVSPAVKLVTNYTKN 225
           W+EGHT +M +   + +     DL+A    +L AVP + G +  +N   A  + T   + 
Sbjct: 360 WQEGHTAHMTLEGATEEVHQILDLYARIYTDLLAVPVIKG-VKSENEKFAGGMFTTTVEG 418

Query: 224 YQP 216
           Y P
Sbjct: 419 YIP 421


>SPAC823.06 |taf3||transcription factor TFIID complex subunit
           Taf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 433 WRPRPRVTQARTYSSFVQDGK-RVTPVTW 350
           W   P+V + R  S FVQD + +V P  W
Sbjct: 93  WFNGPQVAELRRVSGFVQDSETQVKPKDW 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,858
Number of Sequences: 5004
Number of extensions: 50856
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)