Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C06
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    31   1.3  
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    31   1.3  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    31   1.3  
U23450-7|AAK31470.3|  170|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
            B0416.1 protein.
          Length = 1203

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 17/195 (8%)
 Frame = -1

Query: 665  TEDADALASRINKTLGSWPILQLTDTNDDRELASFAMLLPAAPLLNIKQLSADEND--TS 492
            T+  D  + + N+ +     +Q  D N     AS +     AP  +  ++   EN   T 
Sbjct: 952  TDSDDEDSEKSNRDMSYRTAIQSFDQNSQSASASSSKSTTTAPSNSEMRIEITENPLHTY 1011

Query: 491  LLDL-VNLRSDASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYN-------- 339
            +  L +  +S AS S   H  +++  + A+  +L   +       G   V N        
Sbjct: 1012 ITPLRIEKKSSASSSSSSHQPSSSIEKQAARRLLQPISTTHNIRYGVATVENSSQDPTRP 1071

Query: 338  PSRQD------LHANLTAVPSVPGTITIQNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVV 177
            PS  D      LH  L A  +   + T   +SP +  V +  +     +  L+P +  + 
Sbjct: 1072 PSTDDSLGDPALHEPLWANLNPHSSYTSAMMSPIMNEVMSNDETTDDEKGRLIPDRPPIP 1131

Query: 176  VSYVPIKHEKREKDE 132
             S   +K  KREKD+
Sbjct: 1132 HSPRELKRLKREKDQ 1146


>Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.5 protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 448 CDNDASLRRFTRSKREVSFSSAESCFIFNKGAAGRS 555
           C+   +L +  RSK+  SFSS  S  +FN  A+G S
Sbjct: 194 CNYVGNLYQMYRSKKPYSFSSEGSIVVFNLAASGNS 229


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 340 TRPGR-ISTRISLLYPPCPGR*QFKTSRQPSNLSPTIRRTISR 215
           T+P + I +R+SLL PP P   Q K +++   ++ T RRTI++
Sbjct: 320 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 361


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 340 TRPGR-ISTRISLLYPPCPGR*QFKTSRQPSNLSPTIRRTISR 215
           T+P + I +R+SLL PP P   Q K +++   ++ T RRTI++
Sbjct: 388 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 429


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = -1

Query: 776 IRXDGVHAEGRXSLPDLILXNHNVSMXRPPSAAPVPVTEDADALASRINKTLGSWPILQL 597
           +R +G+H EG  +L   +  N N+          +P  + A ALA    KTL SWP L++
Sbjct: 606 VRQNGIHEEGIRALVAALKHNRNLRYLWLEDNTVLP--KGAKALA----KTLESWPKLEV 659

Query: 596 TDTND 582
            + +D
Sbjct: 660 LNLSD 664


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           a protein.
          Length = 960

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = -1

Query: 776 IRXDGVHAEGRXSLPDLILXNHNVSMXRPPSAAPVPVTEDADALASRINKTLGSWPILQL 597
           +R +G+H EG  +L   +  N N+          +P  + A ALA    KTL SWP L++
Sbjct: 643 VRQNGIHEEGIRALVAALKHNRNLRYLWLEDNTVLP--KGAKALA----KTLESWPKLEV 696

Query: 596 TDTND 582
            + +D
Sbjct: 697 LNLSD 701


>U23450-7|AAK31470.3|  170|Caenorhabditis elegans Hypothetical
           protein C30B5.6 protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 311 LTAVPSVPGTITIQNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVVVSYVPI 159
           LT +PS   + T +  +    +V+   K      D+ VP K+ + VS  PI
Sbjct: 89  LTTLPSTTQSTTTRTTTQPSTIVSTRQKYVNVDGDIYVPGKTVISVSSTPI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,361
Number of Sequences: 27780
Number of extensions: 303628
Number of successful extensions: 902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)