Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C04
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    33   0.038
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    30   0.47 
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    29   0.82 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   1.4  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   1.9  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   3.3  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.4  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    27   4.4  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 33.5 bits (73), Expect = 0.038
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 320 DMVSKIYAFCGLKFSCLKGFDSGVTLIFPVASDTSERI 433
           ++ S IYA+CGL   CL  ++  +     V +DTS+ I
Sbjct: 184 ELTSPIYAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -3

Query: 351 PQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLGAKNYPSWVQVTR--VLQNTEP 178
           P  A I+D        W GK  +  +K  A +        K +  W Q+TR  VLQ  + 
Sbjct: 288 PVFAKIVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDD 347

Query: 177 A-AFKQYFFT 151
           +  FK  ++T
Sbjct: 348 SPGFKPSYYT 357


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 282 ANEKSQAMTKAQELLGAKNYPS-WVQVTRVLQNT--EPAAFKQYFFTWRDFGMSHS 124
           A++ S  + K ++  G+K+    W +  + L+N   EPA+ ++Y   W DF  S++
Sbjct: 174 ASQISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEYQKQWEDFLKSNN 229


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 531 FFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDA 409
           F T    G KD VP +   GD+   E  EASN I S   D+
Sbjct: 64  FDTGSADGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDS 104


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -2

Query: 403 KDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAGYRKREISGHDESSGI 242
           K+ ++A+I  F A ELE  +  Y   HIWQ    + E   ++ E  G D   GI
Sbjct: 33  KESTEASINMFLA-ELERLQLEYGKEHIWQ----NEELNLQRVEYQGKDCILGI 81


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 492 PDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQ 364
           P+E    D++E ++ E+ +  L E+S +   ++  P    FK+
Sbjct: 34  PEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEPRDVRFKE 76


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 670 SLSARKLKTLRSLKRFRSPIKYGIRIITDAEESILWT 560
           SL  RKL T++ LK  R  +   IRI+T+A  +  WT
Sbjct: 43  SLEKRKL-TVQDLKDTRMELNNMIRILTEAMAAHEWT 78


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 625 FRSPIKYGIRIITDAEESILWTSTRAMWTFRILHGSWF 512
           F  P +YG      A+    W ST  +W    LHG +F
Sbjct: 77  FGYPTRYGT---PPAQFRTFWDSTGGLWVQGALHGKYF 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,613
Number of Sequences: 5004
Number of extensions: 52037
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)