Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_C04
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 49 4e-06
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 45 7e-05
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 42 5e-04
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 40 0.002
04_03_0260 - 13580396-13582990 30 2.0
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 29 3.5
01_01_0096 + 737928-739894,740164-740221 29 4.6
07_01_0302 - 2169271-2169531,2169778-2169828,2169929-2170381 29 6.1
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 28 8.1
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 49.2 bits (112), Expect = 4e-06
Identities = 25/94 (26%), Positives = 48/94 (51%)
Frame = -3
Query: 429 LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKA 250
L +++ K++ T L+K + N +++D S ++++W+G+ E+ A
Sbjct: 260 LYSINNGQLKLEDTVLTKSILENN----KCFLVDCGS-DLFIWVGRLTQVEERKAASAAV 314
Query: 249 QELLGAKNYPSWVQVTRVLQNTEPAAFKQYFFTW 148
+E + +N P +VTRV+Q E FK F +W
Sbjct: 315 EEFIATQNRPKTTRVTRVIQGYENHTFKSKFESW 348
Score = 47.6 bits (108), Expect = 1e-05
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Frame = -3
Query: 477 GGDDQEFERNEASNVI----LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNI 310
GG RN +V+ L S GK++VT + F Q++L ++ +LDT G +
Sbjct: 638 GGKQNYTSRNATHDVVREPHLYTFSLRNGKLEVTEIFN-FSQDDLLTEDMMVLDT-HGEV 695
Query: 309 YVWIGKQATANEKSQAMTKAQELLG-AKNYPSW---VQVTRVLQNTEPAAFKQYFFTW 148
+VW+G+ A EK +A Q+ A + S V + +V++ EP F+ Y F+W
Sbjct: 696 FVWMGQCVDAKEKQKAFEIGQKYAEHAAAFESLSPDVPLYKVVEGNEPCFFRTY-FSW 752
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 405 GKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQEL 241
GK + PF + +L+ + +ILDT IY + G + E+++A+ Q L
Sbjct: 150 GKRAIRVKEVPFARSSLNHDDVFILDT-EKKIYQFNGANSNIQERAKALEAIQHL 203
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 45.2 bits (102), Expect = 7e-05
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = -3
Query: 366 QENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLGAKNYPSWVQVTRVLQN 187
+E L Y+LD S IYVW+G++ E+ +A + A+ELL N P + R+++
Sbjct: 333 RELLDSTKCYLLDCGS-EIYVWMGRETPLEERKRAGSAAEELLREVNRPK-SHIVRLMEG 390
Query: 186 TEPAAFKQYFFTW 148
E F+ F W
Sbjct: 391 FETVIFRSKFSKW 403
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = -3
Query: 498 LVPDESTGGDDQEFERNEASN-VILSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTI 322
++P+E GG F E + ++ + GK V PF + +L+ + +ILDT
Sbjct: 175 IIPEE--GGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTK 232
Query: 321 SGNIYVWIGKQATANEKSQAMTKAQEL 241
S I+ + G ++ E+++A+ Q L
Sbjct: 233 S-KIFQFNGSNSSIQERAKALEVVQYL 258
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 42.3 bits (95), Expect = 5e-04
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = -3
Query: 405 GKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLG--- 235
G +K+ + F Q++L ++ +ILD S +I+VW+G+Q + QA+ ++ +
Sbjct: 633 GNLKIKEIYH-FTQDDLMTEDVFILDCHS-DIFVWVGQQVDVKVRLQALDIGEKFVKLDF 690
Query: 234 -AKNYPSWVQVTRVLQNTEPAAFKQYFFTW 148
+N S + +++ +EP F + FFTW
Sbjct: 691 LMENLSSDTPIFVIMEGSEPTFFTR-FFTW 719
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = -3
Query: 372 FKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELL----GAKNYPSWVQV 205
F Q++L ++ ++LD + +++VW+G++ A +SQAM ++ L +N +
Sbjct: 622 FTQDDLMAEDIFVLDCRT-DLFVWVGQEVDAKLRSQAMDIGEKFLLHDFLMENLSQDTPI 680
Query: 204 TRVLQNTEPAAFKQYFFTW 148
V + +EP F + FFTW
Sbjct: 681 FIVTEGSEPQFFTR-FFTW 698
>04_03_0260 - 13580396-13582990
Length = 864
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = -1
Query: 632 KAISFANQVRDQDHHGRGRVDIVDKYSSDVDVQNSSRLLVQELRIWC 492
+A+ N +R++ + + +D++DK+SSD+ + + +L +WC
Sbjct: 758 EAVQLINLLREKAQNNQ-LIDMIDKHSSDMVSYQEEVIQMMKLAMWC 803
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = -1
Query: 632 KAISFANQVRDQDHHGRGRVDIVDKYSSDVDVQNSSRLLVQELRIWC 492
+A+ N +R++ + + +D++DK+S+D+ + + +L +WC
Sbjct: 553 EAVQLINLLREKAQNSQ-LIDMIDKHSNDMVSHQEEVIQMMKLAMWC 598
>01_01_0096 + 737928-739894,740164-740221
Length = 674
Score = 29.1 bits (62), Expect = 4.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 572 DIVDKYSSDVDVQNSSRLLVQELRIWC 492
D++DK+S+D+ V + + +L +WC
Sbjct: 570 DLIDKHSNDMQVHRQEIIEMMKLAMWC 596
>07_01_0302 - 2169271-2169531,2169778-2169828,2169929-2170381
Length = 254
Score = 28.7 bits (61), Expect = 6.1
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 9/128 (7%)
Frame = -3
Query: 537 SEFFTALGSGVKDLVPDESTGGDDQEF-------ERNEASNVILSEVSDATGKIKVTPLS 379
+EF G G K L+P + ++EF E N +N +S + + T K +T
Sbjct: 84 TEFIAYSGEGFKLLIPSKWNPSKEREFPGQVLRYEDNFDANSNVSVIINPTTKKTITEFG 143
Query: 378 KPFKQENLSPQNAYIL--DTISGNIYVWIGKQATANEKSQAMTKAQELLGAKNYPSWVQV 205
P E Q ++L SG G ++ A + + + ++G K Y S +
Sbjct: 144 SP---EEFLAQVDFLLGKQAYSGKTDSEGGFESDAVATANILESSAPVVGGKQYYSVTVL 200
Query: 204 TRVLQNTE 181
TR E
Sbjct: 201 TRTADGDE 208
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 415 RRHGKDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAG 287
R H D + E+ + R LE+ ER Y W+ L+ D E+G
Sbjct: 22 RNHEDDDDEEEEESGEGRVLEAWERAYADDRSWEALQED-ESG 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,213,881
Number of Sequences: 37544
Number of extensions: 352439
Number of successful extensions: 1096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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