Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C04
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical pr...    95   6e-20
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    41   0.001
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    41   0.001
AC091125-4|AAK27888.1|  732|Caenorhabditis elegans Hypothetical ...    30   1.8  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    29   4.1  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   4.1  

>Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical
           protein K06A4.3 protein.
          Length = 475

 Score = 95.1 bits (226), Expect = 6e-20
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
 Frame = -3

Query: 537 SEFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKP--FKQ 364
           S F++  G GV  +        DD  + +     + L +VSDA+G  KV+ +S+    ++
Sbjct: 218 STFWSYFG-GVSSVRKVSKGKDDDDNYWKRLTEQITLWKVSDASGAAKVSMVSQGENIRK 276

Query: 363 ENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLGAKNYPSWVQVTRVLQNT 184
           E L P++A+ILD I+G I+VWIG + T  E+S+A+   Q  L   + P W QVTRVL++ 
Sbjct: 277 EQLDPKDAFILDAINGGIFVWIGHECTLEERSKALIWGQNYLKQHHLPRWTQVTRVLESA 336

Query: 183 EPAAFKQYFFTWRD 142
           E   F Q+F  W D
Sbjct: 337 ESTQFTQWFRDWVD 350



 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
 Frame = -3

Query: 432 ILSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTK 253
           +L +VSD +G + V  ++  F QE+L   +  ILD ++ +IYVW+G  A ANEK +A+  
Sbjct: 360 LLFQVSDESGLLHVEEIAN-FTQEDLDGDDVMILDALN-SIYVWVGANANANEKKEALNT 417

Query: 252 AQELLGAKNYP--SWVQVTRVLQNTEPAAFKQYFFTWRD 142
           A+  L     P      +  + Q  EP  FK++F +W D
Sbjct: 418 AKLYLEKDKLPRHKKTAIDTIFQGKEPPTFKKFFPSWDD 456


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = -3

Query: 369 KQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLGAKNYPSWVQVTRVLQ 190
           KQ+ L  +  ++LD+ S +I++WIGK+A    K        EL    + P + QV R  +
Sbjct: 766 KQDMLGSKGVFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETE 824

Query: 189 NTEPAAFKQYFFTW 148
             E   F+  F  W
Sbjct: 825 GEESMMFRSKFAGW 838


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = -3

Query: 369 KQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLGAKNYPSWVQVTRVLQ 190
           KQ+ L  +  ++LD+ S +I++WIGK+A    K        EL    + P + QV R  +
Sbjct: 766 KQDMLGSKGVFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETE 824

Query: 189 NTEPAAFKQYFFTW 148
             E   F+  F  W
Sbjct: 825 GEESMMFRSKFAGW 838


>AC091125-4|AAK27888.1|  732|Caenorhabditis elegans Hypothetical
           protein Y67D2.6 protein.
          Length = 732

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 309 YVWIGKQATANEKSQA-MTKAQELLGAKNYPSWVQVTRVLQNT 184
           Y + GK  T  E     M K   ++  K+YP WV  T V+Q++
Sbjct: 643 YHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVMQDS 685


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = -3

Query: 570  YCGQVLERCGRSEFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKV 391
            Y  Q +      E    + S V  ++ ++S      E E+   SN+    +S     +  
Sbjct: 2805 YVDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSS 2864

Query: 390  TPLSKPFKQENLSPQNAYIL 331
            T  S  F+++ L PQNA +L
Sbjct: 2865 TSNSFEFQRDILEPQNANVL 2884


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = -3

Query: 570  YCGQVLERCGRSEFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKV 391
            Y  Q +      E    + S V  ++ ++S      E E+   SN+    +S     +  
Sbjct: 2805 YVDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSS 2864

Query: 390  TPLSKPFKQENLSPQNAYIL 331
            T  S  F+++ L PQNA +L
Sbjct: 2865 TSNSFEFQRDILEPQNANVL 2884


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,742
Number of Sequences: 27780
Number of extensions: 289052
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)