Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_C03
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 136 3e-33
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 61 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 3e-09
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 50 4e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 35 0.012
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 34 0.021
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 29 1.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 1.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 1.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 136 bits (330), Expect = 3e-33
Identities = 62/68 (91%), Positives = 66/68 (97%)
Frame = -2
Query: 498 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 319
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 318 SIVHRKCF 295
IV+RKCF
Sbjct: 368 GIVYRKCF 375
Score = 103 bits (246), Expect = 4e-23
Identities = 56/103 (54%), Positives = 63/103 (61%)
Frame = -1
Query: 808 EREIVXDIKEKLXYVAXDFEXEMXXXXXXXSLEKSYDFPTVRSSPSETKDSVAQRLSSNP 629
EREIV DIKEKL YVA DFE E+ SLEKSY+ P + + A P
Sbjct: 205 EREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQP 264
Query: 628 RSWVWKLAASXETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 500
+ + A E TYNSIMKCDVDIRKDLY N V+SGGTTMYP
Sbjct: 265 SALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Frame = -2
Query: 498 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 328
G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 327 SGP---SIVHRKC 298
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 33.9 bits (74), Expect = 0.028
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 682 SSPSE-TKDSVAQRLSSNPRSWVWKLAASXETTYNSIMKCDVDIRKDLYANTVLSGGTTM 506
S P E T+++ + S+ + ++ + N I +CDVDIR L N ++ GGT++
Sbjct: 299 SKPIEQTENNEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSL 358
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 695 PDGQVITIGNERFRCPEALFQP 630
PDG + G ER++ PE LF P
Sbjct: 267 PDGSRMMFGAERYQIPEHLFVP 288
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -2
Query: 498 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 319
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 318 SIVHRKCF 295
+++ R+ F
Sbjct: 372 NVIFRRRF 379
Score = 59.7 bits (138), Expect = 5e-10
Identities = 34/101 (33%), Positives = 51/101 (50%)
Frame = -1
Query: 808 EREIVXDIKEKLXYVAXDFEXEMXXXXXXXSLEKSYDFPTVRSSPSETKDSVAQRLSSNP 629
E+EIV +IKEK YVA DF E+ +Y P ++ T+ A + NP
Sbjct: 210 EKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNP 269
Query: 628 RSWVWKLAASXETTYNSIMKCDVDIRKDLYANTVLSGGTTM 506
+ + + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 270 EMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTL 310
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -2
Query: 498 GIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEYDES 325
G+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE
Sbjct: 358 GLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEV 417
Query: 324 G 322
G
Sbjct: 418 G 418
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 595 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 500
E Y SI+ CD ++R L N V++GGT++ P
Sbjct: 326 ELVYQSILACDSELRSPLLNNIVVTGGTSLIP 357
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -3
Query: 695 PDGQVITIGNERFRCPEALFQPSF 624
PDG G ERFR E LF PSF
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSF 307
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 50.0 bits (114), Expect = 4e-07
Identities = 32/100 (32%), Positives = 46/100 (46%)
Frame = -1
Query: 802 EIVXDIKEKLXYVAXDFEXEMXXXXXXXSLEKSYDFPTVRSSPSETKDSVAQRLSSNPRS 623
E V ++KEKL YV+ D E + L ++Y P R ++ P
Sbjct: 207 ETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHL 266
Query: 622 WVWKLAASXETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 503
+ E +++I DVDIRK LY VLSGG++MY
Sbjct: 267 VGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMY 306
Score = 48.8 bits (111), Expect = 9e-07
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = -3
Query: 698 LPDGQVITIGNERFRCPEALFQPSFLGMEACGI 600
LPDG+VI +G+ER+ CPE LFQP +G E G+
Sbjct: 242 LPDGRVIKVGSERYECPECLFQPHLVGSEQPGL 274
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -2
Query: 444 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 322
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 441 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 304
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 595 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 503
E N + +D+RK LY N VLSGG+T++
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -2
Query: 498 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 319
G+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 649 GMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
Query: 318 SIV 310
+
Sbjct: 709 EYI 711
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 665 ERFRCPEALFQPSFLGMEACGI 600
E+ R PE +F PS +G++ GI
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGI 615
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 713 REVLRLPDGQVITIGNERFRCPEALFQPSFLGMEACGI 600
R++ + + QV+ + NERF PE LF PS + + GI
Sbjct: 263 RDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGI 300
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 543 KSLRMSTSHFMMELYVVSXDAASFHTQERGLEESLWATESFVSD 674
++L ST H + EL V + H Q L L T SFV+D
Sbjct: 151 ETLLSSTQHQLTELKDVMHSMSDSHEQNNALHPPLSRTTSFVAD 194
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 498 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 328
G A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 544 GFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKM 603
Query: 327 SGPSIVHRK 301
G ++ K
Sbjct: 604 LGSRVLQYK 612
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 622 WVWKLAASXETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPWNRRPY 482
W +K+A +T Y + D D KD+ V G + PW + Y
Sbjct: 743 WCFKVAELDDTLY-PLNTVDTDFSKDILIPKVARRGLSQLPWALQSY 788
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 402 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 301
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 706 SYDFPTVRSSPSETKDSVAQRLSSNP-RSWVWKLAASXETTYNSIMKCDVDI 554
S D T+ S+PS S Q +S+P + L+++ TTY S + +V++
Sbjct: 292 SQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEV 343
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 477 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 367
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,540
Number of Sequences: 5004
Number of extensions: 58209
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -