Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_C02
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.26 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    28   1.4  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    28   1.9  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   4.3  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   7.5  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 447 IFHPKLSHVISFHFMLIN-*CFKLIKFISFRSISFVIKRNT 328
           +FH  +SH+ISFHF+  +   F L+ FI F   S  +  N+
Sbjct: 170 LFH--ISHLISFHFLFFSFLSFPLLSFILFPCFSLFLSSNS 208


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -1

Query: 292 LSVGKIRTTTTVAHHLSNCCPSHRIGSMYDLR 197
           LS   + TTTT +H L  CC  + IG MYDL+
Sbjct: 631 LSDSSLSTTTTDSHGLPTCC--YDIG-MYDLQ 659


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 553 SYTFTDTKQLINHRYYT 603
           SY+ TD K+L+NH +YT
Sbjct: 401 SYSSTDPKKLLNHLFYT 417


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 634 YKTIHTATLLRSRPKYDGLPSL*RQIPLFLKDXY 735
           +K IH    + S PKYD  P   + I + LK  Y
Sbjct: 411 WKAIHWVNEIESNPKYDNWP---KSIQILLKPIY 441


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 655 TLLRSRPKYDGLPSL*RQIPLFLKDXYLQAXIFIKSR 765
           ++ ++R K+DG+    ++IPL L+     + IF +SR
Sbjct: 237 SVYKARNKFDGVEYALKKIPLRLRSFSTSSNIFRESR 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,705
Number of Sequences: 5004
Number of extensions: 55808
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)