Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B24
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    29   0.96 
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    27   3.9  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    27   3.9  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   6.7  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    26   6.7  

>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = -3

Query: 432 LPKKSKKDSKERRTHAITPCSGKPRSMLNICSRSKKKARKTESTTTYQSQIIDTNSIK-- 259
           +PK  K+ S   +  +  P SGKP    +I +       +  ST T  SQ+++ + +K  
Sbjct: 1   MPKAKKRVSLASKASSRLPSSGKPSQQASIPN------VELSSTVTSNSQVLNNDPLKET 54

Query: 258 IKIRRTSLHEPKITPVPVPVLDVSQRKSKKRR 163
            K +R   H         P +  S RK + R+
Sbjct: 55  KKDKRKDRHFNWQQKFSNPKISASARKRRNRK 86


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 143 VRAPVKNTTLHAVIPQQP*VSPHRNPGIHVLKLPRLVNLTPIKKKK 6
           V+  V    LH  +PQ   V  H+  GIHV       N   I + K
Sbjct: 183 VKPAVHQMELHPFLPQTEFVEKHKKLGIHVTAYSPFGNQNTIYESK 228


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 237 LHEPKITPVPVPVLDVSQRKSKKRRTISPVASESSGEEYD 118
           +  P++     PV    ++KSKK    SP++S S    Y+
Sbjct: 274 ISSPQVINASSPVRKAGKKKSKKALPTSPLSSSSPDASYN 313


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 28/119 (23%), Positives = 57/119 (47%)
 Frame = -3

Query: 471 KVANHIVMNLVNYLPKKSKKDSKERRTHAITPCSGKPRSMLNICSRSKKKARKTESTTTY 292
           ++ +H+V + ++ + K SKK SK + ++ IT  SG   S++++ +R   +  +T+ T+  
Sbjct: 277 QLLSHLVTSSISIVSKPSKKGSKLKISN-ITLRSG---SVVSLYNRINSQTVRTKYTSIE 332

Query: 291 QSQIIDTNSIKIKIRRTSLHEPKITPVPVPVLDVSQRKSKKRRTISPVASESSGEEYDP 115
             Q        + +R   L   +   + V   DV   +  K  +I  +  E++G   DP
Sbjct: 333 AGQFCLRGDRWVPLRINLLLPDENGKLKV-CDDVDNPEPIKYGSIVELVDEATGTTSDP 390


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 540 KKVQTMECSSAVLSYHQ*YVCSVKVANHIVMNLVN 436
           KK+  + C   +L   + +VC+V   N +V +LVN
Sbjct: 124 KKLPVVYCHHGLLMNSEVWVCNVDPRNCLVFDLVN 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,784
Number of Sequences: 5004
Number of extensions: 42050
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)