Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B24
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673...    30   2.3  
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357...    29   4.1  
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502...    29   5.4  
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617     28   9.4  

>06_01_0878 +
           6735266-6735340,6735946-6736041,6738610-6738720,
           6738816-6739309,6739422-6739587,6739666-6739789,
           6739874-6739986,6740085-6740693,6743095-6743385,
           6743845-6743913,6744099-6744188,6744281-6744696,
           6744882-6744969
          Length = 913

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
 Frame = -3

Query: 462 NHIVMNLVNYLPKKSKKDSKERRTHAITPCSGKPRSMLNICSRSKKKARKTESTTTYQSQ 283
           N  +   +   PK  K D            +GK   + N   ++ K+ RK    +  ++ 
Sbjct: 70  NPFLKAFIQDFPKLIKTDLSVPTEEEPLTTNGKTSGVRNRYKQTVKRGRKGSQISPSKTY 129

Query: 282 IIDTNSIKIKIRRTSLHEPKITPVPVPVLD--VSQRKSKKRRTISPV 148
            + ++   +++ R++  +   TP+ VP  D    QR +KKR+   P+
Sbjct: 130 PLRSSHSNVRVLRSASKKKNETPI-VPTNDNTAVQRVAKKRKRSKPL 175


>10_01_0326 +
           3574129-3574329,3575144-3575692,3575914-3576072,
           3576349-3577543,3577626-3577762,3578052-3578242,
           3578888-3579218
          Length = 920

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 189 SQRKSKKRRTISPVASESSGEEYDPSRGDTAAAMSVA 79
           +Q+K K++R   PVA  ++G+E   S+G      S A
Sbjct: 46  AQKKGKRKRRSKPVAGAATGDEAAGSKGPNLTRCSAA 82


>12_02_1007 -
           25248653-25249078,25249956-25250021,25250108-25250260,
           25250961-25251336,25252001-25252143
          Length = 387

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 158 FHRLPVRAPVKNTTLHAVIPQQP*VSPHRNP 66
           +HRL    P   TT   ++P+QP V  H  P
Sbjct: 78  YHRLSPPPPAMGTTTTTLLPEQPLVDDHHLP 108


>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
          Length = 507

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 228 PKITPVPVPVLDVSQRKSKKRRTISPVA--SESSGEEYDPSRGDTAAAMSVA 79
           P  TP P P+L   Q    +++ +SPVA  + SS    D S G +  A + +
Sbjct: 133 PSFTPPP-PILPAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATS 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,878
Number of Sequences: 37544
Number of extensions: 267037
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)