Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B22
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.8  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    26   5.4  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   5.4  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    26   7.1  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   9.4  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   9.4  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   9.4  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 262 KLTPVVLETGNVLLIENHE-YGQSLKLDAHVDSYGD 158
           K+ P + E    + +E HE   +SLKL  HVD+  D
Sbjct: 461 KVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVND 496


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 123 PSTFPLFPQSRRSP*LSTCASSFRLCPYSWF 215
           P    + PQ+     L  C +S  LC YS F
Sbjct: 255 PEVLAVLPQNESMSSLEACINSLYLCDYSGF 285


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 365 TEHTMYLKLDVNVDGXRRQ-ASVGLQQLEREAPPVEADACSAGDRQRL 225
           TE  M+L +  +V       AS+ L  L +  PP   +  SAGD   L
Sbjct: 71  TEQKMFLGVRADVGKYLLAVASIQLPYLNQTVPPTTMEGASAGDESSL 118


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 315 PXPVYVHVQLQVHSMFSVHYFIQQLVILPYRDKLPAHSVTSL 440
           P     +VQ Q+  + S +Y++QQ     YR  L A++  SL
Sbjct: 465 PANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSL 506


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 678 EELIDRLLRAREPNVFAYADKLWSXGHHDIVNDF 577
           ++L++RL ++ + N F   D +WS  H+ I+  F
Sbjct: 46  KKLLNRL-KSIQTNTFERPDIIWSCCHYKIIQHF 78


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 283 NEKRHLWKLTPVVLETGNVLLIENHEYGQSLKLDAHVDS 167
           N   ++++ TPV   + +      H   ++++ DAH+DS
Sbjct: 541 NLTSNIYRWTPVSTNSTSKNSFNGHTINENMRYDAHMDS 579


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 201 PYSWFSMSKTLPVS 242
           P SW+S+SK +PVS
Sbjct: 34  PASWYSLSKKVPVS 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,863
Number of Sequences: 5004
Number of extensions: 56476
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)