Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B22
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z82094-2|CAB05023.2|  279|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81529-10|CAB04290.1|  338|Caenorhabditis elegans Hypothetical p...    28   8.9  
AY204193-1|AAO39197.1|  338|Caenorhabditis elegans nuclear recep...    28   8.9  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical
           protein C13A10.1 protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 265 WKLTPVV-LETGNVLLIENHEYGQSLKLDAHVDSYGDRLLWGNNGNV 128
           W   P++ L T +  L E++  G S +LD  V ++G+ +L+   GN+
Sbjct: 320 WLKNPILNLMTSSEFLTEDYGSGPSWRLDTVVSTHGNLVLYDRYGNL 366


>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 292 WSPTLACLRYPSTFTSSFRYIVCSVFIILYSSLLFSHT 405
           W P  A + YP T  + F +++   F+  YS  L S T
Sbjct: 52  WRPLTALIYYPVTPQTGFHWLMMCYFLYNYSKALESET 89


>Z82094-2|CAB05023.2|  279|Caenorhabditis elegans Hypothetical
           protein ZK525.2 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = +3

Query: 138 LFPQSRRSP*LSTCASSFRLCPYSWFSMSKTLPVSSTTGVSFHRWRFSFELLEPHACLSP 317
           LF + R    L T A+ F    Y  FS ++T+ + + +    H +     L+E      P
Sbjct: 100 LFGKLRLGELLQTLAAQFT-AGYFAFSFARTIWLRAYSTTDAHSYVMG--LMESCGFNHP 156

Query: 318 XPVYVHVQLQVHSMFSVHYFI 380
            P+Y H+ +++   F V + +
Sbjct: 157 YPIYYHLAIELIGTFIVRHVL 177


>Z81529-10|CAB04290.1|  338|Caenorhabditis elegans Hypothetical
           protein F35E8.12 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 681 IEELIDRLLRAREPNVFAYADKLWSXGHHDIVNDFFPSEVKLIT 550
           +E+  D+L  +R+ NVF   +K+    +H  ++D F  ++KLI+
Sbjct: 100 LEKAYDKLENSRD-NVFDRKNKIPKYCNHQELDDMFEIDIKLIS 142


>AY204193-1|AAO39197.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-108 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 681 IEELIDRLLRAREPNVFAYADKLWSXGHHDIVNDFFPSEVKLIT 550
           +E+  D+L  +R+ NVF   +K+    +H  ++D F  ++KLI+
Sbjct: 100 LEKAYDKLENSRD-NVFDRKNKIPKYCNHQELDDMFEIDIKLIS 142


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 535 ENHRKILRSSSEAGRQCRLVQRSP 464
           ENH +I+R +  AGR+ +++Q  P
Sbjct: 160 ENHAEIVRGTIFAGREAKIMQNDP 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,242
Number of Sequences: 27780
Number of extensions: 323326
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)