Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_B21
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 332 4e-92
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 328 4e-91
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 138 9e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 1e-14
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.19
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.25
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.78
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 4.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 5.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.2
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 9.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 332 bits (815), Expect = 4e-92
Identities = 145/181 (80%), Positives = 164/181 (90%)
Frame = -3
Query: 682 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 503
LVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 263 LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLL 322
Query: 502 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 323
YRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCML
Sbjct: 323 YRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCML 382
Query: 322 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 143
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 383 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Query: 142 S 140
S
Sbjct: 443 S 443
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/28 (78%), Positives = 23/28 (82%)
Frame = -1
Query: 750 SSITASLRFDGALNVDLTEFQTNLCLTP 667
SSITASLRF G+LNVDL EFQTNL P
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYP 267
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 328 bits (807), Expect = 4e-91
Identities = 145/181 (80%), Positives = 162/181 (89%)
Frame = -3
Query: 682 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 503
LVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 259 LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLL 318
Query: 502 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 323
YRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCML
Sbjct: 319 YRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCML 378
Query: 322 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 143
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 379 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
Query: 142 S 140
S
Sbjct: 439 S 439
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -1
Query: 750 SSITASLRFDGALNVDLTEFQTNLCLTP 667
SSITASLRF+G+LNVDL EFQTNL P
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYP 263
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 138 bits (334), Expect = 9e-34
Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 3/183 (1%)
Frame = -3
Query: 682 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 503
+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L
Sbjct: 257 MVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAAL 316
Query: 502 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 323
+RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFI 368
Query: 322 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEV 152
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E
Sbjct: 369 GNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
Query: 151 GMD 143
G+D
Sbjct: 429 GID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.9 bits (176), Expect = 1e-14
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Frame = -3
Query: 682 LVPYPRIHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMA 515
L+P PR HF L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 260 LIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFIS 319
Query: 514 CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 335
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 320 ILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL--- 376
Query: 334 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 164
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +
Sbjct: 377 --MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINE 434
Query: 163 YE 158
YE
Sbjct: 435 YE 436
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 792 PNXHQPXXXHRTXFSSITASLRFDGALNVDLTEFQTNLCLTP 667
P HQ T S+ T +LR+ G +N DL +L +P
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSP 264
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -1
Query: 630 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 451
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 450 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 364
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 9.6
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = -1
Query: 630 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 451
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 450 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 361
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.25
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -1
Query: 642 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 469
T S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 468 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 376
+ S P +N +T S TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 29.1 bits (62), Expect = 0.78
Identities = 28/97 (28%), Positives = 46/97 (47%)
Frame = -1
Query: 672 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 493
TPV++S++ T SS P T P + T+ ++ + +TPV ++ CT
Sbjct: 507 TPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
Query: 492 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 382
TS P T P S ++ S++ PV+ + TTS
Sbjct: 559 TSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/97 (25%), Positives = 44/97 (45%)
Frame = -1
Query: 672 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 493
TP++T++ T +S+P T + +P + T+ ++ + +TPV ++ CT
Sbjct: 420 TPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTS 476
Query: 492 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 382
TS P T + S P +N +T S TS
Sbjct: 477 TSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 26.2 bits (55), Expect = 5.5
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = -1
Query: 687 TNLCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAV 508
T + TP++T++ T +S+P T + +P + T+ ++ + +TPV +S +
Sbjct: 461 TPVTSTPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTIS 517
Query: 507 CCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 382
T VTS P T + + SVL S+ P++ + TTS
Sbjct: 518 SSTPVTSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.78
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = -1
Query: 663 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 484
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 483 PRM*TRPSLPSKPSVLSNSST 421
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 458 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 637
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 638 RVRDQWEVDTGVR 676
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 586 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 461
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 294 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 121
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 120 EPKSTK 103
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.9 bits (59), Expect = 1.8
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -1
Query: 747 SITASLRFDGALNVDLTEFQTNLCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTH-- 574
SIT++ + +VD+ T PVSTS + + + +P P+ S P+ S ++
Sbjct: 221 SITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLV 280
Query: 573 -ASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVL 436
SS T T S + T++ S +LPS S L
Sbjct: 281 ETSSTLTDSVFTTVTATSDSSVITYTLINSVTSSSETTNLPSSSSSL 327
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 669 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 553
P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1242 PSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 717 ALNVDLTEFQTNLCLTPVSTSHWSRTRQSSLPRRPTMNSF 598
ALN+D T+F + L S SH + RQ++L N +
Sbjct: 430 ALNIDTTQFPSYLSYHETSVSH-NTYRQNNLEELKNQNDY 468
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 644 RDQWEVDTGVRHKLVWNSVRSTFRA 718
RDQW V T + +VWN RA
Sbjct: 289 RDQWVVSTSSQKTIVWNLALPNDRA 313
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 636 QSSLPRRPTMNSFPSPRSQTHASSPPTR 553
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 690 QTNLCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*N 544
QT C T S S W +Q+ +P + N+F S ++ + PPT + N
Sbjct: 51 QTAACAT--SCSDWYPQQQTHMPHQ---NAFDSAKATAKMALPPTAFSN 94
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 462 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 376
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 481 WVRRHHGTAYSKPCTCHDGG 540
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -1
Query: 675 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 523
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 465 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 370
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 9.6
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -1
Query: 669 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 490
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 489 SYPRM*TRPSLPSKPSVLSNSSTG 418
+ P + P S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,920
Number of Sequences: 5004
Number of extensions: 69246
Number of successful extensions: 266
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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