Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B20
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   4.1  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   5.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   7.1  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   9.4  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 269 THSLPGAKWLPDPIDIYNVNMPPTLRY 189
           THSLP ++W    I  + ++ PP   Y
Sbjct: 40  THSLPISEWYKSSISEWTLDYPPFFAY 66


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 473 LARHADLKGSGALH*TLLIKDTQYTGLYGLITEGDYKS 586
           L ++AD+  S  +  T +  +TQ T +Y  +TEGD  S
Sbjct: 529 LLKYADVAKSNPMF-TKMYSETQPTPIYQGVTEGDISS 565


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 31  WCPGRFRFTNQPGRWRGSRYLGYLYCNYTGTFWRE 135
           W P     T     WR     GY  C++ GT  RE
Sbjct: 577 WDPSGRYVTTSSTIWRHKLENGYRLCDFRGTLLRE 611


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 571 FGYKSIQTGVLCVFDE*CSVQCPRAFEV 488
           F +KS+Q    C+ DE   VQ  R  E+
Sbjct: 277 FEHKSVQDITTCILDEVDGVQMARVLEI 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,214
Number of Sequences: 5004
Number of extensions: 69555
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)