Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B20
         (793 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016745-1|AAH16745.1|  299|Homo sapiens capping protein (actin ...    30   8.3  
AK097058-1|BAC04939.1|  193|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AK058174-1|BAB71703.1|  299|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AB053259-1|BAB61901.1|  299|Homo sapiens male germ cell-specific...    30   8.3  

>BC016745-1|AAH16745.1|  299|Homo sapiens capping protein (actin
           filament) muscle Z-line, alpha 3 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 444 EFIRAIR--C*LLPDMPTSKARGHCTEHYSSKTHNTPVCMDL*PKETTNHSVI 596
           EF+ A    C L+ D      +G C  H   + ++ P+C+D  P   ++H+V+
Sbjct: 26  EFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLCIDGNPVLLSHHNVM 78


>AK097058-1|BAC04939.1|  193|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39739 fis, clone SMINT2016440. ).
          Length = 193

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 19  YAFLWCPGRFRFTNQPGRWR 78
           ++F W P RFR+ + PGR+R
Sbjct: 126 FSFPWAPRRFRYVSGPGRFR 145


>AK058174-1|BAB71703.1|  299|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25445 fis, clone TST08542, highly similar to Mus
           musculus mRNA for gsg3. ).
          Length = 299

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 444 EFIRAIR--C*LLPDMPTSKARGHCTEHYSSKTHNTPVCMDL*PKETTNHSVI 596
           EF+ A    C L+ D      +G C  H   + ++ P+C+D  P   ++H+V+
Sbjct: 26  EFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLCIDGNPVLLSHHNVM 78


>AB053259-1|BAB61901.1|  299|Homo sapiens male germ cell-specific
           actin capping protein alpha3 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 444 EFIRAIR--C*LLPDMPTSKARGHCTEHYSSKTHNTPVCMDL*PKETTNHSVI 596
           EF+ A    C L+ D      +G C  H   + ++ P+C+D  P   ++H+V+
Sbjct: 26  EFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLCIDGNPVLLSHHNVM 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,614,734
Number of Sequences: 237096
Number of extensions: 2671412
Number of successful extensions: 4145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4145
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)