Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B20
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 411 FSYIRSHGXKDKTSGAFVCSDAPVFESRRRVPIFLVKYTYFFLD 280
           F+Y  +     +T G       P F+  +   ++L KY Y F++
Sbjct: 501 FTYKININSDKETKGMMRIFLGPAFDEIKHDMVYLQKYFYLFME 544


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 411 FSYIRSHGXKDKTSGAFVCSDAPVFESRRRVPIFLVKYTYFFLD 280
           F+Y  +     +T G       P F+  +   ++L KY Y F++
Sbjct: 501 FTYKININSDKETKGMMRIFLGPAFDEIKHDMVYLQKYFYLFME 544


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 321 VPIFLVKYTYFFL 283
           VP+FL+ Y+Y+F+
Sbjct: 227 VPLFLIIYSYWFI 239


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 321 VPIFLVKYTYFFL 283
           VP+FL+ Y+Y+F+
Sbjct: 103 VPLFLIIYSYWFI 115


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/39 (20%), Positives = 22/39 (56%)
 Frame = +2

Query: 38  LDGLDSQISPADGAAVGI*VIYTATTRGLFGGNAMSQVV 154
           LDG D+ + PA+ ++  + V++  +   +   +  +Q++
Sbjct: 14  LDGYDAGVRPAENSSQPLAVVFGLSLHHIIDVDEKNQIL 52


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 287 KKYVYFTRKIGTRLRDSNTGASLHTNAPD 373
           KKY   +  +G+R R     +S H+   D
Sbjct: 208 KKYAISSNSLGSRSRSFQRTSSCHSRYED 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,041
Number of Sequences: 438
Number of extensions: 4731
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)