Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_B19
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    39   9e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   1.7  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.2  
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.9  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.8  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = -3

Query: 640 FLTPSNSRQAKDLVSVLQEANQIISPQLQSMA 545
           + T  N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 472 YFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 646 ICFLTPSNSRQAKDLVSVLQEANQIISPQLQSMA 545
           + F   +N   AK+L+ +LQEANQ     L +MA
Sbjct: 531 VAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 335 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 448
           H+IY+    S    C +  YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367


>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 707 FVGGYIHRIGRTDVXNQKEHHMLSYPFKFPSSQRFGICFT 588
           + G Y    GR  V  Q+ H +LS   K P+S     CFT
Sbjct: 61  YSGMYTFETGRLLVLKQR-HRVLSMELKKPNSSTIKPCFT 99


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 640 FLTPSNSRQAKDLVSVLQEANQIISP 563
           FL PSNS   KDL +V ++ N++ SP
Sbjct: 271 FLLPSNSTSIKDLKNV-KKGNRLNSP 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,604
Number of Sequences: 5004
Number of extensions: 50709
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)